| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1772 |
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| Symbol | |
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| ID | 5104772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1713915 |
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| End bp | 1715384 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640507670 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001191851 |
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| Protein GI | 146304535 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0605301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGAGA AGAACGCATC TGAGATTATA GCCAGGCTGG ACAGGTTACC AGTCTGGTCT
CTTCCCGCCA CCTTCATTGC TGTTTTAGGT ACAGGTTTCC TTTTCACGTT TTTTGATATC
TTTGATATTA ACGTCTCATT TATCCAGACA GCTCTTACAA CCTTTGGCGT GAGTTCGCCG
TCATCTCCCG AGATCCCCCA ACTACTTGGA CCCGTAGTCC TCTGGAATCT GGTGGGGTAT
GTAATTGGGG CCCTTGCCTT AACCCCTCTT GCGGACAGAT ATGGGAGGAA GAGAATGCTC
ATGATTACCA TGGCCATCAC AGGGCTGGGG TCACTGTATA ACGCGCTCTC CCCAGATTAC
CTGAACTATT TGCTCGCTAG GACCATTACA GGGATAGGTG TGGGGGCAGA TCTGGCCATA
GTTAACACGT ATATAAACGA GGTATCTCCC GTAAACGGAA GGGCGAAGTT TACATCCTTG
GTTTTCCTTT TCGCTACCCT AGGAGCGTTT CTAGGCCTAT GGCTTGGTCT CCTGATCACT
ACTCCGCCAG CACCTTTCCC CCTAGGGCTT CCATTTGCGT TGGGGACAAC CGGGATTTTC
GCAACCGCTG GTTGGAGAAT CATGTACGGA ATAGGTTCCC TCCTCGCCCT GATAGGCCTC
CTACTCAGGG TGGAGCTACC CGAGTCTCCG AGATGGCTTG CGTCTAAGGG GAGGATTATG
GAGGCCTCAA AAATCGTGGA GAGGATGGAG GAGGCAGCTA GAAAGAAGAT AGGAGAACTG
CCTCCAGTAC CGCAACACAT TGAGGTCAAG ACTATCACAG AGGTTTCATA CAAGGAAGCC
TTGAGGACAA TTCTAGGGAA TAGGGTTTAC CTGAAGAGAT GGATCATTGT AATGTCCATG
TGGTTCTTTG GGTATATCAC GGTGTATACA AACGCTGCAG GGCTAACCAC TATTCTCTCG
TCCTTAGGGT ATCCATCATC CGAGGCAGGC ATGATAGCAT CGCTTGGGAT ACTTGGTTTC
GTGGCTGTAC CGGTTCTTCT AATCCTGTTT GGGGACAGGC TAGAGAGAAA GGTGTGGGTT
CCAATCTCCG CGGTAATCAT GTTGTTGGGC GGGGCAATCA TGGCTGAGGC TGGGCATAAC
TTCTTCCTTG AGGTTTTGGG GGCATTTGTT CTCTTCTTCG GGAATAACCT GTGGATTCCC
ATCTCCTACG CCTGGACTAC GGAAAACTTT CCCACAAGAG CTAGGGTTAC TGGCTTCGGA
TTGGCCGATG GAATAGGGCA TATTGGAGGA GGAATAGGTG CCTTCCTCGT GGCATTACAG
ATTGGTAACA TAGTCTCTCA TGGTGTAACA AGTAACACAC CCCTGGAGGT GTTCATGTTA
ATGATATCGT TCCAGCTCTT ATCTGCGTTG ATATCCCTGG CAGGAATCAG GACAGCAAAG
AGGCGTCTCG ACGAGATATC CCCTCACTGA
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| Protein sequence | MEEKNASEII ARLDRLPVWS LPATFIAVLG TGFLFTFFDI FDINVSFIQT ALTTFGVSSP
SSPEIPQLLG PVVLWNLVGY VIGALALTPL ADRYGRKRML MITMAITGLG SLYNALSPDY
LNYLLARTIT GIGVGADLAI VNTYINEVSP VNGRAKFTSL VFLFATLGAF LGLWLGLLIT
TPPAPFPLGL PFALGTTGIF ATAGWRIMYG IGSLLALIGL LLRVELPESP RWLASKGRIM
EASKIVERME EAARKKIGEL PPVPQHIEVK TITEVSYKEA LRTILGNRVY LKRWIIVMSM
WFFGYITVYT NAAGLTTILS SLGYPSSEAG MIASLGILGF VAVPVLLILF GDRLERKVWV
PISAVIMLLG GAIMAEAGHN FFLEVLGAFV LFFGNNLWIP ISYAWTTENF PTRARVTGFG
LADGIGHIGG GIGAFLVALQ IGNIVSHGVT SNTPLEVFML MISFQLLSAL ISLAGIRTAK
RRLDEISPH
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