| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1750 |
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| Symbol | |
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| ID | 5104750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1684358 |
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| End bp | 1687153 |
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| Gene Length | 2796 bp |
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| Protein Length | 931 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640507645 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001191829 |
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| Protein GI | 146304513 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00374519 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.037221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACT CGCTCAGCAA GAAGATATCG AGCCTAATGA AGGAGAGAAA CTGGACCAAA
ATGACCCAGA TCCAGGAAAT GGCCATGGAA CCCATTTTGA GGGGAAATAA CACGCTAATC
ATAGCCCCTA CCGGATTTGG GAAAACTGAG GCTGCACTTC TCCCTATTCT TAGCCTGATG
TCAGAGGGAG AGCAAAAACC TGTGTCCCTG ATTTACGTTA CTCCACTTAA GGCACTGATA
AATGACATCA CGATCAGGAT AGATTGGTGG GCCTCGAAGC TGGGGTTTGT GGTGAGCAGA
AAGCATGGTG AGGTGCCCCA GAAGGAGAAA AACATGAGAC TGAGGAAGGC TCCCCACATC
CTGGTTACTA CCCCAGAGGG CCTTGAAATA GACATGGATT GGGCCTCGAA GTTTAGGGAT
AACTACAGGA ACGTGAAGTG GGTGATAATT GATGAAATAC ACGAGCTCAT GGGGTCCAAG
AGGGGAGCTC AGCTTTTCGT TCTCCTGGAA AGGTTGAAGG ATTTCTCAGG AAAGGACTTC
CAAAGAATTG GTTTGTCAGC TACTATCAGT AACGAGGAGC TTGTGGCAAA TACCCTCTTC
GGATCTTCCA GTAGGCCCAA GACCATCGTA AAAAGTGAGG CGGGGAAGGA GTTCAGACTG
AAGATAAGAT CCATTAAGGA TTCCGGGGAT GTTTGGGTAG CGTCGGCCAA GATCATCAAG
GAGTCCTTGG AGCCACCTAC CCTGGTATTT ACTAATTCCA GGTTCCTCAC GGAAAGATTA
CATGAGGAAC TGGAAAGGCT CGGAGAGAAG GGGATTTTCG TTCACCACTC CTCAATCTCC
AGGGATTCAA AGAGCAATGC TGAGGAGAAC CTCAGGAGTG GTAAGGCTGG GGCGGTCCTT
TGTACCAAAA CCCTGGAGCT TGGTATAGAT GTGGGAAAGG TTAAGAAAAT AATAATGTAT
AGGCCTCCCC CATCAGTGGC GTCATTCCTT CAGCGATTGG GGAGGAGCGG TCATTGCGTT
GGTGGCATAC CCTACGGTGA GATCATATGT GTGCAGGACT TTGATTGCCT CGAAGCGTTG
GCAATATATT CCCTTTCGAG GAAGGGGAAG CTCGAACCTC CTAGAAGGGT TCGACCGTTA
GACGTGGTAG CCAGGGAGAT ACTTGGAATG CTACTCCAGT ACTCCTCTAT AAAGTTGGAA
CGCGTCTTCT CGATTATTAC TGCCTCTCAG GTATATAGGG ACTTAACGAG AGAGGAATTC
CAGAACCTCA TCTCCTACCT CCAGAGGAAT AACCTAGTGG TGGTAGAGGG AGACGAACTT
AAGCTAGGGA AATCGTTCTT CAAGATCTGG ACCTTTAATA GGTCCAATAA CTTCGTATGG
GCCAAGAACT TCTCGGAGTT CTTCTCCCTG ATAAGTAATG ACGACGCCTT CACCCTGAGG
AGCGGGGAGA AGATAATAGG TGAGATAGAC GCAATCTACG TGTATAAACA TATTCGTCCC
GGTGACCTGA TTAGGATTAG CGGTAAACTA TGGAAGGTTG CCAGAATACA CAACGGAATG
ATGATGGTAG ACCTAACGCC AGCAGACCGT GGAGAGGGAG AAATCCCCAT CTGGAGGGGA
GAGGGAGTAC CAAAGTCGCA ACTAATTCCT AGGGAAATCC AAGAACTCTT CAAGATTGGT
GATAAAATAC TAGAAAGCGA GATTTTGGAT GATAGTGCTA AGGCAAGCCT AAAGGCTCTG
ATGGAGAAAT ACGTAAGGAG TAAGTTACCT TTACCTTCCT CAAGTACAAT TTACATGACA
GTGACAGATA AGGAAACTGT TTATTCTACA CTGATTGACG AAAGGGTAGC TAACACCATT
GCTCACATGT TGATGTACTT GGCGAGTTCC AAGTACACCC TAAACGTGTA TACTAGGGCT
TCTATATATG GATTCTCCAT TAACATAACT GACAGGGACC TTCTCAGGGA ATTGGTCCAA
ATGAAGGAGG AGAGAATAAG GAAAATACTT TTCAGATCTA TTCTGAGATC CCCGCTCTTC
ATGTCCGTGG AAAAGGAGAT TCAGGCCAGC TTTGGTAAGA TAGGTAAGAT AAACCCGAAG
GAGGATAAAC TGATAATCAA GGAAGGTCTA AGGCAGACCG TAAAGCGTTA CTTTAACATA
AAGGGAACCC TCACCACGCT GAAAAGGATA AGGGAGGGGA AGATAAGGAT AGTTAGATCG
GAGCTGACGC CCTTGGGAGA GGCAGTACTT TCTCACGCTC CCATCAAACC TTGGATTTCT
GGGATCAATA TCCTGATTTA CGATGCCTTG AAGGGTGGAG CCTATACTGT TCACGAAATC
TCCGAAATGT TATCTATTCC TCCAAGAAGC CTAGAGGTGA AACTTAAGCA GATGAGAAAA
ACGAGCACAA AGTATAGGGT AACCAGCTTT GTGGACGTGG ATAGTAAGGA GATAAGGTGG
TGTACAGTGG ATGAACTTAA ACAACTTGTG AACTCAGACG AGTTCTATAC CTCCTTCGCT
CCCATTAACG AGGATGAGAC TTTCATTGCA GAGATGAGGT CCATTGAAGG CTCTAGCAAC
ACGGAGTTAA TATTTAAGCC GAAACAGATA TTAGAAAATC CAGAGGAGTT CGCCAAGAGG
ATCCCCATGG ATGAAGTTGG GGAGCTTAGG ATCCACGATC CCGTGGATCC CATGATATGT
AACATGTCCC CAAGGTACTA TTTCGTGAGG AGGGATATAG TTCCCTATCT ACTCTTAAAC
GCGTCGGCGT ACATTCAAAA CCTCAAATAT ACGTGA
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| Protein sequence | MSDSLSKKIS SLMKERNWTK MTQIQEMAME PILRGNNTLI IAPTGFGKTE AALLPILSLM
SEGEQKPVSL IYVTPLKALI NDITIRIDWW ASKLGFVVSR KHGEVPQKEK NMRLRKAPHI
LVTTPEGLEI DMDWASKFRD NYRNVKWVII DEIHELMGSK RGAQLFVLLE RLKDFSGKDF
QRIGLSATIS NEELVANTLF GSSSRPKTIV KSEAGKEFRL KIRSIKDSGD VWVASAKIIK
ESLEPPTLVF TNSRFLTERL HEELERLGEK GIFVHHSSIS RDSKSNAEEN LRSGKAGAVL
CTKTLELGID VGKVKKIIMY RPPPSVASFL QRLGRSGHCV GGIPYGEIIC VQDFDCLEAL
AIYSLSRKGK LEPPRRVRPL DVVAREILGM LLQYSSIKLE RVFSIITASQ VYRDLTREEF
QNLISYLQRN NLVVVEGDEL KLGKSFFKIW TFNRSNNFVW AKNFSEFFSL ISNDDAFTLR
SGEKIIGEID AIYVYKHIRP GDLIRISGKL WKVARIHNGM MMVDLTPADR GEGEIPIWRG
EGVPKSQLIP REIQELFKIG DKILESEILD DSAKASLKAL MEKYVRSKLP LPSSSTIYMT
VTDKETVYST LIDERVANTI AHMLMYLASS KYTLNVYTRA SIYGFSINIT DRDLLRELVQ
MKEERIRKIL FRSILRSPLF MSVEKEIQAS FGKIGKINPK EDKLIIKEGL RQTVKRYFNI
KGTLTTLKRI REGKIRIVRS ELTPLGEAVL SHAPIKPWIS GINILIYDAL KGGAYTVHEI
SEMLSIPPRS LEVKLKQMRK TSTKYRVTSF VDVDSKEIRW CTVDELKQLV NSDEFYTSFA
PINEDETFIA EMRSIEGSSN TELIFKPKQI LENPEEFAKR IPMDEVGELR IHDPVDPMIC
NMSPRYYFVR RDIVPYLLLN ASAYIQNLKY T
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