| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1748 |
|---|
| Symbol | |
|---|
| ID | 5105111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1680562 |
|---|
| End bp | 1684011 |
|---|
| Gene Length | 3450 bp |
|---|
| Protein Length | 1149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640507643 |
|---|
| Product | reverse gyrase |
|---|
| Protein accession | YP_001191827 |
|---|
| Protein GI | 146304511 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1110] Reverse gyrase |
|---|
| TIGRFAM ID | [TIGR01054] reverse gyrase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.21829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0908503 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAACTT CAGTGTTCCA TAGCTCTTGT CCCAATTGTC AAGGACCTCT CGAAGATTAC
AGAGCTCTGG CAGGCTTACC TTGTACTTCG TGTATGCCAG GAAGTGTGGA TTCGTTCAAG
GATTTGCCTC AGGAGGAAAA GATAAAGGTA GTGTATAATA TCCTAGTTAA TAACGGAAAA
CTGGGGAAGT ATTGGGAGCT CTACTACACC ACGGAGATGT ATAATGAGAT CATCAATTAT
TTTAAACAGG TCACGGGGAA CGAACCTTGG TCGTTGCAGA GGCTTTGGTT GAGACGATTG
GGGGAAAGGG AAAACTTCTC GCTATCTGCA CCTACAGGGA TGGGGAAGAC CACTACCCTG
ATCACCTACT CGACTTACCT TTCAAAGGGA GTTCTTTACA TCGTTCCCAC CAAGTCCCTA
CAGGAGCAGA TATGTTCCAA AATTGGGGCA ATCTCAAGCG TTTCCTGTGG GAAAGTTGAC
CCAAACACCA TTTCAGTGCT TACCGTGAGT TACGTCAACA AGAACTATGA TCACATGAAA
GACTACAGGC CAAATTTCAT AGCAGTCGAC GATGCAGACG CCATAATCAA GAGTGGAAAG
ACCACAGATA AACTAGTGGA GCTAATGGGG ATTCCCAAAG ACGTGTATGA GGACGCAATG
AGGCTGGTAA GACTTAGACG CATGCTTTAC CTGAAGGATA ACAAGGACGA GATAGTGGAG
AAGATAGCAC TTCTAGAGAG AAAGATACAG AGTTTCACGG GCATTATTGC TCAGTTGGTT
GTTGCCAGTG CAACGCTTAG ACCTAAGGGA GTGAAACAGA AGGCATTGAG ACATATCTCA
GGCTTCGACA TTTCCACAGC TCAGACTTAT GCCAGAAATA TAGTGGACTC GTTCACCTTC
TCGAGCCTGG AAGAAGTGGT ACAGAAGCTT GGACCTGGAG GTCTCATCTT GGTTTCTAGG
GAGTACGGAA AGGAGAAAAT GAAGGAGATC AAGGAGTCAC TCACCTCCCT GAACTTTAGG
GTAGAGTTGG CAGTAAGCGG TAGGAAATTC CTCCAGGATT TCTCGGATGG AAAAACGGAC
ATCCTAGTGG GTTCGGCATC GTATTACGGC GTAGCCGTGA GGGGGATAGA TGAACCGAAA
AGGCTGAAAT ATGTACTGTT TTACGGAGTA CCGAAATCTA GGACCAGGGC GGAGGAATCC
GTGAAGAACC CCTTCACCCT TCTGAGGGTC TCCAGACTCC TGGGAATCCA GGTTCCAGAG
GAGGAAATAT TAGGCCTGTC CCCTGCGGAG GCTCAGGCCA TAAAGATCGC GATGATCACT
GGTCAGTCTT TGGAGGGAAG GCTGGGCGCA CTCCTAGAGA AAATGAAGGT TCTCGTAGAG
GAGGCACAAG AAGCCCTTAG AAAGGTAGAT GGAACTATTA CAGGAGAGAC TTTTCAGATC
TCTAGAAAGG GAAGAGAAGT TTTCATAGAG TATCCCGATA TAATAACTTA CCTCCAGGGG
TCTGGAAGGA GTAGTAGGCT TCTAAATGGA GGTTTAACGC AAGGCTTAAG CGTTATCTTG
GTGGATGACC AAGTTATATT TGAACTATTC AAGAGGAAAA TGAACTTTCT AATCCCTGGA
TTCGCCCCAG TGAACTTTGA AGCACTTGAG TTGGACAGGG TAAAGGAGGA GATTGAAAGG
ACCAGAAGGG AAGGAGGAAA CAAGGTTGAG ATTAAAACGG GGCTTCTTGT GGTCGAGTCT
CCCACAAAGG CTAAGACGAT CTCCAGACTA TTTGGGTTTC CTGCACGTAG AAGCGTGGGA
GGAGTTCCGG TATACGAAAC GGTGATAGTG GAAGGGAACA GGGTGTATAT CCTAGATGTT
ATGGCCACTA AGGGTCACGT GACTGACCTC ACACTGGAGG AGAAGGGATA CTATGGAGTA
GAAATTAAGG GAGACAAGAT CAGCCCTCTA TACTCCCACA TCTACAGGTG TGCCAGTTGT
AAAAGATCGG TCAGCAAAGA AGTAGAGACT TGCCCGTATT GCGGATCCAA CCTGATCTCG
TCCTCTCTCT CAACCATCAA TGCCATGAGA AAGCTCGCCC TAGAAGTAGA CCAGATATTC
ATTGCTACCG ATCCGGATAC CGAAGGCGAG AAAATCGCCT ATGACGTCGC AGTTAATGTG
TCCCCATACA ACCCCAATAT CATGAGGATA AGGTATCACG AGGTAACCAG GAGTGGTATA
GTGGAGGCAC TGAGGTCAGG TTCCACCCTG GACATGAACA CCGTTAACAG CCAGATAGTT
AGAAGGATAG AGGACAGATG GATAGGATTC GAACTAAGTA AATTGCTCAA GCTTCGGTTC
GGAGACAGGA ATCACGGTGC AGGTAGGGTG CAAACTCCAG TCCTAGGTTG GATAGTGAAA
AGGACCACGG AGTATAAGCA GAGAATGGGG TGGATACTAA ACGTTAAGGT AGGAAACTAC
GTATACAGGG AGTTTCACAG GGAGAAGCCC AACATTCCGG ATAGCACCGT GGAGGTTGAG
GTATTGGAGG AAAGGGAGGA GACATTACTC CCACCTCCTC CTTTCTCCAC GGATGATCTG
TTGATAGATG CGTACAGGTG GTACAGGATT CCGGCGGAGA GGGTCATGAG GCTGGCCCAG
GATCTCTTCG AAAGCGGTCT TATCACCTAT CACAGAACCG ATAGCCATCA CGTGTCTGGC
AAGGGAATGG AGATAGCTAA GGAATACCTA GAGAAGGTGA ACTTATCTCA AGAGTATCAG
CCCAGGGGAT GGGGGAATGA AGGAACGCAC GAGGCCATAA GACCAACAAG GCCCCTGGAT
GTGGACTCGC TCAAGAGGGA GATTGCTGAG AACCCAACCA TGCTTTCGGT GAAGTTCACC
TGGGCCCACT TCGCGCTTTA CGACATGATA TTCAGGAGAT TTATGGCTAG TCAAATGCGT
GAGTCTAAGG GAACCATACG GAAATACAGG ATGAAGTTAG GGGAAAGTAT CTGGGAAGTG
GAGCTACTAG TCAGGATGAG TGGTGGTTTC TCTAACCTCT ACACCTACAG GTTATATGAC
GTACCCGTGG GAAAGGTGAA CGCTGAGATC AACGTAGTTA GGGGATCAGA TGTAAAGCTG
TTGACGTATG CCGACGTAAT TAAGGACATG AAGGAGAAGA GGATAGGAAG GCCCAGCACC
TATGCCAAGA CTATCCAGTC ACTTCTAAGA CACGGATATG TAATAGAAAG TAAAAGGAAA
GCAGTCCTCG TGGCAACAAA GAAGGGGATA AACGCCTATG AGTTCCTGTC TAAGTTCCCA
GATCTTACCT CAGAGGAGGT TACCGCAGAT TTACTCTCCA AGATGGATGC AATATCTTCG
GGGAGCTTGG AGCCAACCAC AGTCCTACTT CCGGTTCTCC GTGAGCTACA GGGTCTAGAA
ACTCTTCCTA AGTCTGAACA GGAGATATGA
|
|---|
| Protein sequence | MITSVFHSSC PNCQGPLEDY RALAGLPCTS CMPGSVDSFK DLPQEEKIKV VYNILVNNGK
LGKYWELYYT TEMYNEIINY FKQVTGNEPW SLQRLWLRRL GERENFSLSA PTGMGKTTTL
ITYSTYLSKG VLYIVPTKSL QEQICSKIGA ISSVSCGKVD PNTISVLTVS YVNKNYDHMK
DYRPNFIAVD DADAIIKSGK TTDKLVELMG IPKDVYEDAM RLVRLRRMLY LKDNKDEIVE
KIALLERKIQ SFTGIIAQLV VASATLRPKG VKQKALRHIS GFDISTAQTY ARNIVDSFTF
SSLEEVVQKL GPGGLILVSR EYGKEKMKEI KESLTSLNFR VELAVSGRKF LQDFSDGKTD
ILVGSASYYG VAVRGIDEPK RLKYVLFYGV PKSRTRAEES VKNPFTLLRV SRLLGIQVPE
EEILGLSPAE AQAIKIAMIT GQSLEGRLGA LLEKMKVLVE EAQEALRKVD GTITGETFQI
SRKGREVFIE YPDIITYLQG SGRSSRLLNG GLTQGLSVIL VDDQVIFELF KRKMNFLIPG
FAPVNFEALE LDRVKEEIER TRREGGNKVE IKTGLLVVES PTKAKTISRL FGFPARRSVG
GVPVYETVIV EGNRVYILDV MATKGHVTDL TLEEKGYYGV EIKGDKISPL YSHIYRCASC
KRSVSKEVET CPYCGSNLIS SSLSTINAMR KLALEVDQIF IATDPDTEGE KIAYDVAVNV
SPYNPNIMRI RYHEVTRSGI VEALRSGSTL DMNTVNSQIV RRIEDRWIGF ELSKLLKLRF
GDRNHGAGRV QTPVLGWIVK RTTEYKQRMG WILNVKVGNY VYREFHREKP NIPDSTVEVE
VLEEREETLL PPPPFSTDDL LIDAYRWYRI PAERVMRLAQ DLFESGLITY HRTDSHHVSG
KGMEIAKEYL EKVNLSQEYQ PRGWGNEGTH EAIRPTRPLD VDSLKREIAE NPTMLSVKFT
WAHFALYDMI FRRFMASQMR ESKGTIRKYR MKLGESIWEV ELLVRMSGGF SNLYTYRLYD
VPVGKVNAEI NVVRGSDVKL LTYADVIKDM KEKRIGRPST YAKTIQSLLR HGYVIESKRK
AVLVATKKGI NAYEFLSKFP DLTSEEVTAD LLSKMDAISS GSLEPTTVLL PVLRELQGLE
TLPKSEQEI
|
|---|
| |