Gene Msed_1704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1704 
Symbol 
ID5105350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand+ 
Start bp1643578 
End bp1644201 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content48% 
IMG OID640507598 
Producthypothetical protein 
Protein accessionYP_001191783 
Protein GI146304467 
COG category[K] Transcription 
COG ID[COG1321] Mn-dependent transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.430869 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.452318 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGTA TCTCCGCCCT CCAAGAGGCC ACCAAACCCA GGCAGGGAAA TAGGCCCAGC 
TACGATGAGG CTTACGTTAT GTGGGCTTTG AACCTGATCC ATGACGAACC GCCAATGGGT 
AGGTTAACCC TCATGAAGAA GCTTGGGTTG AGCGAGGCCT CGGTGAAAAC CATGTTGAAG 
AGATTGAGGG AGATGGGCCT GATAACTGTT GATAGGATCG GGGGAACTGA ATTAACGGAG 
GGTGGGAAGA AACTGGTGGA GGGATGGAGA TCGATGGTAA GAATATCTGA GGTCTACATT 
AACTCGCTTA ACTGGAAGGC CATCCAACTG GTGATTCTAG GTGGGAAAAA CCTAGTGGAG 
AGGGAGGGGG TAATCCAGTT GAGAGATCTC ATCATCAGAA CTGGCGCTGA GGCTACCCTG 
ATCACTATTA AGGAGAACCA GGGAATAGAG ATTCCACCAA AGACTGAGGA CTTCTCCATG 
AAATCCCTTT TACAGGAGGT AGCCCTTCTT TCCTCCTCAT TACCTGTGGG CAGTCTCATC 
ATTTACCTTA TCCCACAGGA CATTCATTTG GCATATAAGG TGGGAATTTC TCTCCTAGAA 
CATGAGAGTA GGATTTCTGG TTAA
 
Protein sequence
MSGISALQEA TKPRQGNRPS YDEAYVMWAL NLIHDEPPMG RLTLMKKLGL SEASVKTMLK 
RLREMGLITV DRIGGTELTE GGKKLVEGWR SMVRISEVYI NSLNWKAIQL VILGGKNLVE 
REGVIQLRDL IIRTGAEATL ITIKENQGIE IPPKTEDFSM KSLLQEVALL SSSLPVGSLI 
IYLIPQDIHL AYKVGISLLE HESRISG