Gene Msed_1676 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1676 
Symbol 
ID5105322 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand- 
Start bp1617135 
End bp1617740 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content46% 
IMG OID640507570 
ProductN-glycosylase/DNA lyase 
Protein accessionYP_001191755 
Protein GI146304439 
COG category[L] Replication, recombination and repair 
COG ID[COG1059] Thermostable 8-oxoguanine DNA glycosylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.201402 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.189082 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTAAGAA AAGTCGTAAG AGACGCAAGG TTAAGAGCAA GGGTTCTAGA AAGAGTAGAG 
GAGTTTAGAC TAAATAAAAG GGCAAGCGAA AGGGTTTGGT TTAGGGAACT GGTGCTCTGT 
ATACTCACCG CCAATTCTAG TTTCATCGGC GCTTTCACAG CGCTTCAGTA CTTGGGGGAT 
CTCATACTAT ATGGGTCTAT AGAGGAGATC TCCAGTGCTC TGAAAAATGC GGGCTATAGG 
TTTCCAAACC TTAAGGCGAG GTATATCATC GAGAGCAGAT CTTACTACGG TAAACTTAGG 
GAGATTGGGC GAGTAGCTGA CAGAGATCAG ATTGAGGCAA GGGAAATTTT ACTTGAAATT 
AAAGGACTTG GAATGAAGGA AGCGAGTCAC TTTCTCAGGA ACATGGGTTA TCTGGACTTG 
GCGATAATTG ACAGGCACAT CCTGCGCTTT TTCTCTGACT ACCTAGAGGA TCAGAAGATC 
TCCTCGAAAT CCAAGTACTT TGAACTGGAA TCTGTGTTCA GGAGTATCGC GTCTGCCCTG 
GACCTTCCAG TGGGCGTCCT GGACCTATAC GTCTGGTATC TCAAAACGGG TAAGCTAGCT 
AAGTAG
 
Protein sequence
MLRKVVRDAR LRARVLERVE EFRLNKRASE RVWFRELVLC ILTANSSFIG AFTALQYLGD 
LILYGSIEEI SSALKNAGYR FPNLKARYII ESRSYYGKLR EIGRVADRDQ IEAREILLEI 
KGLGMKEASH FLRNMGYLDL AIIDRHILRF FSDYLEDQKI SSKSKYFELE SVFRSIASAL 
DLPVGVLDLY VWYLKTGKLA K