Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_1589 |
Symbol | |
ID | 5103953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | - |
Start bp | 1536160 |
End bp | 1536582 |
Gene Length | 423 bp |
Protein Length | 140 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640507476 |
Product | UspA domain-containing protein |
Protein accession | YP_001191668 |
Protein GI | 146304352 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000251397 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0131871 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCGATT CAATTCTCGT GCCATTCGAT GGATCTGAAC ACTCAAAGAG GGCTCTTCAG GTTGCCATAG ACATTGCGAA GAGGTATGGT AGTGTGATAT ATGTTATAGA AGTAGTAGAT GAGGCCATAT TCTACGGCTC CGGCGTCTTA CCTCCTTTGA ATGCCGTAAA GGCCATGGAG AAAAAGGCAA AAGATGACTT AGATTACGCG TTAAAGGAGA TAACAAATGC GGGACTGAAG GGTGTAGGTG AGGCATTGGA AGGGGATCCG GCTAGCGTTA TACTTGATTA TGTTCAGAAG AACGATATAA AGCTAATAGT GATGGGAAGC AGGGGACTAT CTACGATGAA AAGAGTCCTG TTGGGGAGTG TCTCTACCAG GGTTGTCCAG GAGTCTAAAG TCCCAGTCCT GGTAGTTAGA TGA
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Protein sequence | MFDSILVPFD GSEHSKRALQ VAIDIAKRYG SVIYVIEVVD EAIFYGSGVL PPLNAVKAME KKAKDDLDYA LKEITNAGLK GVGEALEGDP ASVILDYVQK NDIKLIVMGS RGLSTMKRVL LGSVSTRVVQ ESKVPVLVVR
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