Gene Msed_1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1562 
Symbol 
ID5104007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1518708 
End bp1519127 
Gene Length420 bp 
Protein Length139 aa 
Translation table11 
GC content45% 
IMG OID640507448 
ProductCoA-binding domain-containing protein 
Protein accessionYP_001191641 
Protein GI146304325 
COG category[R] General function prediction only 
COG ID[COG1832] Predicted CoA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.477139 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0705808 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGAAA GCCAGATAAG ATATGTGTTA ACCAACTTCA AGAGAATCGC TACAATTGGA 
TTTTCCAAGG ATCCAGAGAA ACCATCGCAC AGGGTTCCCA AGTTTCTCAT GGAACATGGA
TACGTAGTTT ACCCCGTGAA TCCCACTGTA ACAGAGATCC TCGGAAGGAA GTCCTATCCT
TCACTCAAGG ATATCGAGGA TGAGATAGAA GTTGTTCAGG TGTTTAGGCC CTCAAAGGAT
GTCCCTGTAA TTATTGACCA AGTACTGGAT AGGAAGAGGG AAAGAAATGA CGTAAAGGCG
ATCTGGCTCC AAGAGGGAAT AAGGGATGAT AAATCCGCCG AGAGGGCCAG GGCCGAAGGT
CTGATAGTTA TCCAGGATAA GTGCATGTAC AAGGAGTACG TAAAACTCTT TGGAGAATAA
 
Protein sequence
MEESQIRYVL TNFKRIATIG FSKDPEKPSH RVPKFLMEHG YVVYPVNPTV TEILGRKSYP 
SLKDIEDEIE VVQVFRPSKD VPVIIDQVLD RKRERNDVKA IWLQEGIRDD KSAERARAEG
LIVIQDKCMY KEYVKLFGE