| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1512 |
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| Symbol | |
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| ID | 5104041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1474931 |
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| End bp | 1476334 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640507400 |
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| Product | general substrate transporter |
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| Protein accession | YP_001191593 |
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| Protein GI | 146304277 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.925564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.774713 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCTT TCAAGTCTTT GGATAGTGTG AAGCTTAACT TCAATCACAT CAAGATCTGG
TACACATCTG GGATGGGTTT CTTCACAGAT GCCTATGATC TTTTTATTAT AGGTGCGATC
CTTGACATAT TCAACGCCTA TCACTTGCCT GGCTTTACCT TAACACCTTT GTATGAAGGT
CTCTTAGCAT CTTCAGCAAT CTTCACTGCA ATAATTGGGC AGTTGGTCTT TGGTGTACTA
GGGGACCTTA TTGGCAGAAA GACTGTTTAT GGTGTGGAAG CCTCTTTACT GACTGCTGGT
GCGGCTTTAT CTGCTTTCGC ACCTAATGTA CTTTGGCTCA TAATTTTCAG ATCTATAATG
GGAATTGGTA TTGGAGGTGA TTATCCCATC TCAGCTACCA TAATGAGTGA GTACGCAAAC
GTAAAGGATA GGGGTAAACT TGTGGCCTTG GTCTTTGCAA ACCAAGGAAT TGGGAGCCTA
GTTGCGGTAG CAGTAGGTGC CATTTCAGCA TTTACCTTGC CTCCAGATCT TGCCTGGAGG
GTAATGGCCT TCGTTGGGGC TATACCGGCA GCTACAGTCA TTTATCTGAG AAGAAAGGTC
CCAGAAACGC CTAGATACTC AGCACTCAAG GGAGATACAA ACAATGTGGA GAAATCTGTT
GAGTTTGTGG CTAAGGATAC ACCCAAGACC GAAGTGAGAA GGGTTAGAAT ACAGAGAAAG
AGCGTATCTG AGTTCTTCTC GAAGTACTGG TTACTCTTGC TTGGAACAGC AGGAACTTGG
TTTATCCTGG ATATAGCCTT CTATGGAACA GGTATTTACT CCGGTCCCAT AGTTTCCTCG
GTACTTGGGA AGCCGGCATC AGTGGGGCAG GAAATAGTGT ACGCAGGCAT TCCATTCATG
GTGGGTTTCT TTGGTTACTT TACTGCAGTT GCACTAATGG ATAAGCTAGG TAGAAAACCC
ATACAGACCT TAGGTTTCGT AATGATGGCA GTGCTTTATG GAGTGGTAGC GTTGCTGGCT
GTAGCTAAGG GGGCTAAATT GGAAGGATTC TTGATTCCTT CTACGCAAGC GTTTGCTCTA
TATGCCCTTT CGTACTTCTT CATTGACTTT GGTCCCAACA CTACAACCTT CGTTATTCCG
TCTGAGGTAT ATCCAACCAG TTATAGGACA ACTGGACACG GTATTTCAGC AGCAGCTGGG
AAGACTGGTG CTGCCATAAC CACCTTCTAC TTCCCTACAC TACTATCCTC ACTAGGAATA
AAGGGCATAT TGGAAATGCT TGCAGTGATA AGCGTCGTGG GTGCAGTTCT CACCTTGATA
GCCGTTAAGG AACCTAAACT CAAGAGTCTT GAGGAGGTTT CCCAGGACTC CGTTGTACTT
GAGCAATCTC AGGAAACTAA ATAA
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| Protein sequence | MEPFKSLDSV KLNFNHIKIW YTSGMGFFTD AYDLFIIGAI LDIFNAYHLP GFTLTPLYEG
LLASSAIFTA IIGQLVFGVL GDLIGRKTVY GVEASLLTAG AALSAFAPNV LWLIIFRSIM
GIGIGGDYPI SATIMSEYAN VKDRGKLVAL VFANQGIGSL VAVAVGAISA FTLPPDLAWR
VMAFVGAIPA ATVIYLRRKV PETPRYSALK GDTNNVEKSV EFVAKDTPKT EVRRVRIQRK
SVSEFFSKYW LLLLGTAGTW FILDIAFYGT GIYSGPIVSS VLGKPASVGQ EIVYAGIPFM
VGFFGYFTAV ALMDKLGRKP IQTLGFVMMA VLYGVVALLA VAKGAKLEGF LIPSTQAFAL
YALSYFFIDF GPNTTTFVIP SEVYPTSYRT TGHGISAAAG KTGAAITTFY FPTLLSSLGI
KGILEMLAVI SVVGAVLTLI AVKEPKLKSL EEVSQDSVVL EQSQETK
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