| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1434 |
|---|
| Symbol | |
|---|
| ID | 5104804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1404489 |
|---|
| End bp | 1405235 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640507322 |
|---|
| Product | exodeoxyribonuclease III Xth |
|---|
| Protein accession | YP_001191515 |
|---|
| Protein GI | 146304199 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC TTTCGTGGAA CGTCAACGGC CTCAAGGCGA TACTCGGTAA GGGCCTTCTT
GATCTTGTAA AGAAGCAGGA ATACGACATC TTGATGTTCC AAGAGGTTAA GAGTAGCCAG
CTACCCATTG ACTTCCAACT ACTTCCATAT AGGTCCTATC TTTATCCAGC TAAGAAGAAG
GGTTATAGCG GAACACTTAC CTTAACCAGG ATAGAGCCAA TATCAGCGAA GTACGGAATA
GGAGATGAGG AGTTTGACTC CGAGGGCAGG GTTATCGCAC TTGAATTTCA AAAGGTTTAC
GTTATCAACG TCTATTTCCC GAACGCAGGA GAGGAACTTA AGAGGCTAGA TTTCAAGTTG
AGGTTTAACC AAAGGTTCCA TGAATTCGTG AAGAACCTTG GAAAGCCCTG CGTGATCTGT
GGGGACTTCA ACGTAGCGCA TGAGGAGATA GATATAGCAA GACCAAAGGA CAACGTTAAC
CACGCAGGTT TCACTCCGGA GGAGAGAAAG TGGTTTCACG AATTCCTTGC CTCTGGGTTC
GTGGATACCT TCAGGATTTT TGTGAAAGAG GGAGGCCATT ACTCATGGTG GTCCTATAGG
TTCCATGCCA GGGAAAAGAA CATAGGCTGG AGAATAGACT ACTGCGTTGT ATCCAAGGAG
CTAGAGAAAC ATGTAAAGAA GGCCGAAATT CTGGAGAAGG TGATGGGGTC TGACCACGCT
CCAGTCACCT TGGAGCTTGA TATTTAA
|
|---|
| Protein sequence | MKILSWNVNG LKAILGKGLL DLVKKQEYDI LMFQEVKSSQ LPIDFQLLPY RSYLYPAKKK
GYSGTLTLTR IEPISAKYGI GDEEFDSEGR VIALEFQKVY VINVYFPNAG EELKRLDFKL
RFNQRFHEFV KNLGKPCVIC GDFNVAHEEI DIARPKDNVN HAGFTPEERK WFHEFLASGF
VDTFRIFVKE GGHYSWWSYR FHAREKNIGW RIDYCVVSKE LEKHVKKAEI LEKVMGSDHA
PVTLELDI
|
|---|
| |