| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1421 |
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| Symbol | |
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| ID | 5104792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1388990 |
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| End bp | 1390825 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640507310 |
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| Product | glycogen debranching enzyme, putative |
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| Protein accession | YP_001191503 |
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| Protein GI | 146304187 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3408] Glycogen debranching enzyme |
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| TIGRFAM ID | [TIGR01561] glycogen debranching enzyme, archaeal type, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.569288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0701501 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGACC CGAAGGAATG CGAGGACAGG GAGTGGATAA TACCTACTGG GACCGGAGGT
TATTCGTCCT CAACCTTCTG CGGAATAAAC TCCAGAACTT ATCACGGCCT GCTAGTTATA
CCGCAGGATC CACCTCACAG GAGATACATG ACCCTGGCCA AGGTGGAGGA TTTCGTTATA
ACTGACGGCC AAGAGTACCC CATGAGCACG AACCATTACC TGAACGACGT GTTTTATCCG
GAGGGGTACA GGTTCCTGAA TCACGTGGAG CGGGGAGAGA ACTTTGTTAG ATGGGACTTC
CTTTTTGGGA ATTCAAGGGT CGAGAGAACC CTGGTTGTGC ACAGGGGTTA CAACGCCATA
ACCCTGTCCT ACGCTTCCCA GAGGGGAGTT TTCAGGATAT GTCCCCTAGT CACGTACAGG
AGTCATCATG TGGCTCTGAA GTCGGTTCAC CCCATCTTCA CGTACAGGCT TCTTCAGGAC
CACATTCTCC TTCTCGCGAA TGGGATACCC TTCCTCAGGG TCAGGATAAG GGGAGACCAC
GTCCTCGATA AGACGGAGTA CTGGTACTAT AACTTCTTTT ACCGTTTAGA CTTCGAGAGG
GGAACCAATT ACCTGGAGGA CCTGTACAAT CCCTTCTGCG TGATCAGCAA GGGGAACAAG
ATTGAGATGG ACTTCTACTG GGGGGAATTT GAGCCCGAGC AGAAAAGGGT TGGGTCCAAA
GAGATCATGG ACCTTCTTTC AAGTGCGGGG AAAAGCTTCG TCGTGAGAAG CGGAGACAAG
TACGCGATCA TTGCAGGATA TCACTGGTTT GATGAGTGGG GAAGGGATAC CATGATCTCC
ATGGAGGGGA TCCTGCTCAT GAACGGGTTG TATGAACAGG CCAAGAGCAT CCTCTTGAGG
TATTTCAATG CAGTTAACAG GGGCCTGATG CCCAATAACT TCCTGGGAAA CAACGAGACC
GCCTACAAGG GAGTCGACGT TTCGCTATGG GGAATCAACG CCGTGTACAA GTACTATCAG
TACACGAATG ACGTTGAGTT CCTGAAAAGG ATATTCCCAA GAATGCTGGA GGTCGTGGAC
TCTTACTGGA AAGGAAACGG AGTTGTGGTG AACAAGGACA ACCTCTTGTA TCACGTTGGA
GCACCTAGGA CTTGGATGGA CGCTCAGTTT GACGGTGAGG TCGTGACTCC AAGGGAAGGA
GCAGCTGTCG AGATCAATGC CCTATGGTAC AACGCGTTAA TGATCATGGA CCAGATCTCC
AAGAGGTTGG GAATACATGA CGACGAGTTC GTAGAGAAGG CCGAAAAGGT GAGGTCGGCG
TTCCTGGAGA AGTTTCCTTC GGAGGCTGGG CTATATGACT ACATTGGATG GGACGATAAG
CCGGGGAAGG AGATTAGACC CAATCAGCTG GTTGCTCTTG GCCTTCCTTA CCCTGTGGTC
TCCAAGGATA TCGCCATGAG GGTACTGGAG GTGGTGGAGA CGGAACTGTT GAGGCCATAC
GGGTTGAGCA CCCTCTCCAA GCGGGATAAA GGTTACACAC CCTTTTACAG GGGCGATAGG
GCCAGTAGAG ACAGAGCGTA TCATAACGGC CCGATATGGC CATGGCTCGT GGGAATCTAC
GTTGATGCTA AGCTCAACTT TGAATACGAT TCCCTCAGAA TCAAGAACCT GCTGAACCAA
TTCAGTCCCC TTCTAGGAGT GGCCGTGAGG GAAAATGGAT ACGTTCCTGA GCTCTTTGAG
GATATTCCTC CCTACAAGAA GGGCGGATGT ATTGCTCAAG CTTGGAGTGT CGCAGAATTG
AACAGGGCAA TTAGAAATAT CATCAATTAC TCGTGA
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| Protein sequence | MLDPKECEDR EWIIPTGTGG YSSSTFCGIN SRTYHGLLVI PQDPPHRRYM TLAKVEDFVI
TDGQEYPMST NHYLNDVFYP EGYRFLNHVE RGENFVRWDF LFGNSRVERT LVVHRGYNAI
TLSYASQRGV FRICPLVTYR SHHVALKSVH PIFTYRLLQD HILLLANGIP FLRVRIRGDH
VLDKTEYWYY NFFYRLDFER GTNYLEDLYN PFCVISKGNK IEMDFYWGEF EPEQKRVGSK
EIMDLLSSAG KSFVVRSGDK YAIIAGYHWF DEWGRDTMIS MEGILLMNGL YEQAKSILLR
YFNAVNRGLM PNNFLGNNET AYKGVDVSLW GINAVYKYYQ YTNDVEFLKR IFPRMLEVVD
SYWKGNGVVV NKDNLLYHVG APRTWMDAQF DGEVVTPREG AAVEINALWY NALMIMDQIS
KRLGIHDDEF VEKAEKVRSA FLEKFPSEAG LYDYIGWDDK PGKEIRPNQL VALGLPYPVV
SKDIAMRVLE VVETELLRPY GLSTLSKRDK GYTPFYRGDR ASRDRAYHNG PIWPWLVGIY
VDAKLNFEYD SLRIKNLLNQ FSPLLGVAVR ENGYVPELFE DIPPYKKGGC IAQAWSVAEL
NRAIRNIINY S
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