| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1420 |
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| Symbol | |
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| ID | 5104791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1387138 |
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| End bp | 1388985 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640507309 |
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| Product | glycoside hydrolase 15-related |
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| Protein accession | YP_001191502 |
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| Protein GI | 146304186 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0134624 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACTTG CCAGCATTGG AAACGGAAAA ATGCTAGTGA ACTTTGATGA CCACGGGAGG
ATTATTGACC TCTATTACCC CTATATAGGA ATGGAGAACC AAACGTCTGG TATTCCCATA
AGGGTTGCGC TCTGGGATGG GAAGAACGTT TATCTGGATG AGTCATGGAA GACCGAGGTC
TCGTACGAGG ACGGAACCAA TCTTGTGGAG GTCAAGTGGA CCCTAGATAA CCCAGGACTT
GAAATAACTT CCTACAACTT CGTCGACGTG AATGAACCTG TGATGAATTC CATAATAAAG
ATACTATCCA GGGATATTGA GGGAAAGCTC AGGCTCTTCT TCGTTCACGA CCTAAACATT
TATTCCAATC CCTTTGGAGA TACTGCACTT CTGGACCCTG TTACCTGGTC CATGATTCAC
TACAAGTCCA AGAGGTACCT AGGAATCAAG CTCATGTCCA CTGAAATGAA CAACACGGAA
TTCTCCGCAA CCAAGGGCGA TCCCTTGGAG GATATAAAGG ACGGGAGATT GGATGGTAGC
CCGATCTCTC ACGGAGACGT GAAGTCCGCG GTGGGGGTGG AACTAAACCT CAGGAGTAAA
TCCTTCGTGA AGGCCTATTA CGTAATAGGG GCAGCGAGGA ATCTCGAGGA GTTGAGGAGA
CTTCTCGGTG AGGCGAACCC AGCCAAGATA GAGAGCAACT TCGTCTCAGT GTTCCAGTTC
TGGAAGAGCT GGCTATCTAA GGGTAGCTGG ACATCTGATC ACGAGAGCTG GATATACAAC
GTTAGTCTCC TGACCGTGAA GAATCACATG GACATGAATG GATCGATCAT AGCCTCCTCA
GATTTCTCCT TTGTGAACAT CTATGGGGAC TCTTATCAAT ACTTCTGGCC TAGAGACGGG
GCCATAGCTG CGCACTCGCT GGATGTTGCG GGATATGGAG AACTGGCCAT GAAGCACTTC
AACTTTGTGA AGGAGATTGC AAATCCCGAG GGTTATCTAC ACCACAAGTA CAACCCCAAC
AGGACGCTTG CAAGCTCGTG GCACCCCTGG CTCTATAACG GGAAGAGGAT CCTGCCAATA
CAGGAGGACG AAACTGCTCT CGAGGTCTGG GCCATAGGAA GTCATTACAG GAGGTATAAG
GACTTGGACG AACTCACAGA GATTTACAGG AAGTTTGTGA AACCAGCTCT ACAGTTCATG
ATGAGGTACA CCGAGGACGG ACTTCCAAAA CCGAGCTTTG ATCTGTGGGA GGAGAGGTAT
GGAATTCACC TCTACACTGT GTCAACGGTG TATGGAGGGT TGGTCATGGG AGCAGAACTC
GCCAAGGGAA TGGGAGACGA AAGCCTTTCA GAAGACGCTC TAGACGTGGC CAAGACCATG
AAGGAACAGG CCCTTTCCAG GTTGACCAAT GGGAGGAGAT TCATCAGGAG GCTAGACGAG
AACTATCAGC CCGATCAGGT TGTGGACGCA AGCATGTATG CCCCGTACTA CTTTGGGATG
GTGGAACCAA ATCATCCCAT TATGATCTCC ACCATGGAGG CCATAGAACA GAGGTTAATG
ATAAACGGTG GAATCGCGAG ATACGAGAAC GACATGTACC AGAGGAGAAA GGCTCAGCCC
AATCCCTGGA TAATCACAAC CCTATGGGTT GCTCAATACA TGATAGATAC TTCCAGGCTG
GATAAGGCCA AGGATCTCCT GACCTGGGTT ATGAAGAGGG CAACCCCCTC TGGTTTCCTT
CCTGAACAGG TTGACCCAGA GACGTGGGAG TCTACCTCCG TCATCCCCCT TGTGTGGTCG
CATGCGGAAC TAATAATTAC ATTAAATAAA TACCACGGCA AATACTAA
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| Protein sequence | MRLASIGNGK MLVNFDDHGR IIDLYYPYIG MENQTSGIPI RVALWDGKNV YLDESWKTEV
SYEDGTNLVE VKWTLDNPGL EITSYNFVDV NEPVMNSIIK ILSRDIEGKL RLFFVHDLNI
YSNPFGDTAL LDPVTWSMIH YKSKRYLGIK LMSTEMNNTE FSATKGDPLE DIKDGRLDGS
PISHGDVKSA VGVELNLRSK SFVKAYYVIG AARNLEELRR LLGEANPAKI ESNFVSVFQF
WKSWLSKGSW TSDHESWIYN VSLLTVKNHM DMNGSIIASS DFSFVNIYGD SYQYFWPRDG
AIAAHSLDVA GYGELAMKHF NFVKEIANPE GYLHHKYNPN RTLASSWHPW LYNGKRILPI
QEDETALEVW AIGSHYRRYK DLDELTEIYR KFVKPALQFM MRYTEDGLPK PSFDLWEERY
GIHLYTVSTV YGGLVMGAEL AKGMGDESLS EDALDVAKTM KEQALSRLTN GRRFIRRLDE
NYQPDQVVDA SMYAPYYFGM VEPNHPIMIS TMEAIEQRLM INGGIARYEN DMYQRRKAQP
NPWIITTLWV AQYMIDTSRL DKAKDLLTWV MKRATPSGFL PEQVDPETWE STSVIPLVWS
HAELIITLNK YHGKY
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