| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1391 |
|---|
| Symbol | |
|---|
| ID | 5104601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1364799 |
|---|
| End bp | 1365278 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640507280 |
|---|
| Product | deoxyUTP pyrophosphatase |
|---|
| Protein accession | YP_001191473 |
|---|
| Protein GI | 146304157 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0717] Deoxycytidine deaminase |
|---|
| TIGRFAM ID | [TIGR02274] deoxycytidine triphosphate deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.45866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000274623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGATTTACG CTCATCAATC AATTGTCAAG TCCCTGGGAA GCATGATATT AAACTATTCT
AGGGAAAACG TTAAGGAAAA TGGATACGAT CTCAGAATCT GTGGTGAAAA GTACTGGAGG
GTTAAGGGGG ACTCTCAGTT ACCTGAAGTC AAATCTGAAC TGGAAGAGCT AAGTTTTTCA
GATTATGCTA GCCTAGAACC TGGAAATACT TACCTGTTTG AGAGCTGTGA AGAGGTAAAT
ATGCCTGCAG ATACCATTGC CATTATGACC TTGAGGAGTA CACTAGCTAG GAATGGATTT
ATCGCACCTC CGACAGTGAT AGATGCAGGT TATCATGGAA AGATTATCAT CTCCATAAGT
ACCTTGAGGG GAGGAAAACT GAAGAAGGGA ATGGGAGTCA TCCATCTCAT ATTCTCGAGG
CTTGACTCAC CCACGGAAAA GGTGTATCAA GGAAAATATC AGGGCGGAAG GCTCATCTAA
|
|---|
| Protein sequence | MIYAHQSIVK SLGSMILNYS RENVKENGYD LRICGEKYWR VKGDSQLPEV KSELEELSFS
DYASLEPGNT YLFESCEEVN MPADTIAIMT LRSTLARNGF IAPPTVIDAG YHGKIIISIS
TLRGGKLKKG MGVIHLIFSR LDSPTEKVYQ GKYQGGRLI
|
|---|
| |