| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1374 |
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| Symbol | |
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| ID | 5103433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1346979 |
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| End bp | 1349081 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640507263 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001191456 |
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| Protein GI | 146304140 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1204] Superfamily II helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0378845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAA TCAGCGTCGA AGACCTACCC ATGGATGCTA AGGTGAAGGA GGTCCTGAAA
AGAAGAGGGA TAGTTACCTT AAATCCTGTG CAATCTGAGG CAGTGGAAAA GGGGCTACTG
GAGGGAAGAA GATTACTTCT GACCTCTCCC ACGGGCTCTG GAAAAACGCT CATAGCAGAG
CTAGGAATGA TATCTCATCT TCTCCGTGGA GGTAAGAGAG CAATTTACGT TACTCCCTTG
AGAGCACTCA CTTCTGAAAA ATATGTTACC TTCAAGGATT GGGAGATCTT AGGTTACAAG
GTAGGGATGA CTTCCGGGGA TTACGATACA GATGACGCGT TTCTGAGCAG GTATGACATT
GTGGTCACGA CTTATGAGAA GCTGGATTCC CTGTGGAGAC ATAACCCCTC TTGGTTGAAG
GAATCGGACT ACTTCATCCT TGACGAATTT CACTATCTAA ATGATGGAAA GAGGGGTCCG
GTGGTGGAAA GCGTGGCCGT GAGATCCAAG AGGAGGAACT TACTGGGGCT TAGCGCAACT
GTAAGCAACG CCGACGCCAT TGCGGAGTGG TTAAACGCCA CACCCGTGAA AACTAACTGG
AGACCTGTCC CCCTCAAGGA AGGTATACTT GTAAATGACA GAAAGATAGT CCTAACCTAC
ACTGACGGGG TAAGCATACA GCTCAAGGGA AATGACGGTA TCCTAGCATA CACCAAGAAG
ATTGTGGAGG AGGGTGGTCA GGTTCTAGTA TTCAGGAACT CTAGGAAGAT GGCTGAGACA
ACTGCAAGGA AGATAGCGGA GCTGAATTTC CCCCTGAAGA AAAAGGAGGT TGAGGATATA
GTCTCTAGGC TCAGAGAAGT TGAGGACGCT GGATCTGAGG AGAGGAACAC CCTAGCTGAG
CTAATGAGTA GGGGGGTTGC CTTCCATCAC GCTGGTCTAT CTAAGGGATT GAGAGACTTG
ATTGAGGAGG GGTTCAGGAG GAGAGTGATC AAGGTGATAA CGGCAACTCC TACGCTGGCT
GCTGGCGTAA ACTTACCAGC AAGGGCAGTT GTGGTAGGGG ATATTTACAG GTTCAACAGG
AAGATCCTAG GTTTTCAAGA GGAAATCTCT GTGATGGAGT ACAAGCAAAT GAGTGGAAGG
GCAGGAAGAC CGGGTTATGA TAGTGAAGGC GAGGCAGTCA TAGTTGTGAG GAACAGGAAG
GACTCCGAGA GGATAGCGAA GAAGTACATT CTTTCCCCAC CTGAACCACT TGAATCCAGG
CTAGGTAACG AGTCCGCGTT TTACTCCTTT CTGCTGGGGT TAGCGTCAGA GGACGGAGCA
AACGAGGAGT TCGTAAGAAC TATGGCTCAA GAGACCTTTC TAGATCACGA GCTCGTGAAG
ACATACCTTG AGACGGGGCT GAACTGGTTG AGAGAGAACG AGTTCCTCAG CGATGGCGTC
AAACTGACCA AGTTCGGAAG AAGGGTTGCA GATCTTTACA TCAATCCATT CACAGCGAAG
TTAATCAAGG ATACCCTATC CATGAGTGAG GCCGAAAACT GCGACATTCC ATACCTTCAC
ATGTTAGCAT TAACGCCCGA TGGACCCATA GCTAACGTGA GTAAACCTGA GGAGGATGAT
CTCTTGGAGT GGGCGCCTTG TCCTCCCTTC ACGGATGTGC CAGATGACGA GGATGAAGCC
TTTCAATATT TCTCCGCCCT TAAGATCGCG CTCATAGTTC ACGACTGGAT AGAGGAAGTG
GATGAGGATG CGATTCTATC AAAGTACGGA ATTGGGTCTG GTGACCTCAG GTCCATAGTC
GAAACCATGG AGTGGCTAAC CTACTCGGGA TATCAAGTGA GCAAGGCCCT AGAGTGGGAG
TCGCATGCTG ATATCATGTT CCTGCTCAAC AGGAGAGTAT CAGACGGCGT TAAGGAGGAT
CTGCTAGACC TAGTGAGAGT TCCTGGAATT GGAAGGAAGA GGGGAAGGTT ACTGTATCAG
AACGGCTTAA CTAAGCCGGA GGACCTAGTC ATGAACCCGG AGAAAGTTAA GGCACTCATA
GGAGAGAAGG TAGGTGAGAA GGTTGTCAAG GACGCTGCAA GAGTTATTGG AGGAGTTCTT
TAG
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| Protein sequence | MKIISVEDLP MDAKVKEVLK RRGIVTLNPV QSEAVEKGLL EGRRLLLTSP TGSGKTLIAE
LGMISHLLRG GKRAIYVTPL RALTSEKYVT FKDWEILGYK VGMTSGDYDT DDAFLSRYDI
VVTTYEKLDS LWRHNPSWLK ESDYFILDEF HYLNDGKRGP VVESVAVRSK RRNLLGLSAT
VSNADAIAEW LNATPVKTNW RPVPLKEGIL VNDRKIVLTY TDGVSIQLKG NDGILAYTKK
IVEEGGQVLV FRNSRKMAET TARKIAELNF PLKKKEVEDI VSRLREVEDA GSEERNTLAE
LMSRGVAFHH AGLSKGLRDL IEEGFRRRVI KVITATPTLA AGVNLPARAV VVGDIYRFNR
KILGFQEEIS VMEYKQMSGR AGRPGYDSEG EAVIVVRNRK DSERIAKKYI LSPPEPLESR
LGNESAFYSF LLGLASEDGA NEEFVRTMAQ ETFLDHELVK TYLETGLNWL RENEFLSDGV
KLTKFGRRVA DLYINPFTAK LIKDTLSMSE AENCDIPYLH MLALTPDGPI ANVSKPEEDD
LLEWAPCPPF TDVPDDEDEA FQYFSALKIA LIVHDWIEEV DEDAILSKYG IGSGDLRSIV
ETMEWLTYSG YQVSKALEWE SHADIMFLLN RRVSDGVKED LLDLVRVPGI GRKRGRLLYQ
NGLTKPEDLV MNPEKVKALI GEKVGEKVVK DAARVIGGVL
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