Gene Msed_1359 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1359 
Symbol 
ID5103418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1331219 
End bp1332400 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content49% 
IMG OID640507248 
Productmajor facilitator transporter 
Protein accessionYP_001191441 
Protein GI146304125 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGACTCGT TCAACTGGCT ACTTCTTTCT AGAGCTCTTA GAAGCATAGG CATAATGTTC 
GTGACCATAT CGAGTTCCCT TTACCTTTCC ACGCTCGGTC TCTCACCCGT GATAATAGGG
TTGGTATTCC TGGGAATGAC CGGCTATATA GCGGGGTTCT CCCTTTCCCT GGGCATGTTA
GGGGACAGGG TAGGTTACAA GAAGTCCCTC ATTCTAGGAG ACCTAATTCC AGCGATTGCC
CTAATACTCC TTATCTCCAC CAGGAATCCC CTCGTGGTAA TTCCGTCAGC GATAATCACA
GGTTTAGGCG GAACCGCAGG GGGAGCTAGG GGGGCCTTCT CCCCTGGATT AACTGCCCTA
GTGGCGAGGA ACTGGAAGGA AGACCAAGAA AGGGTAAGGA GATTGGGAAA GCTAACCTCA
ATCTCCGCTT TAGCTGGAGC AGGTGGTGGT ATACTGCTGA GCTTTCACGA TTACCTGCCC
TTCGGAAACG TGAATGACTT TCGATTCCTC TTTGGGGTAG CTTCTGGTCT TCTTTTCGCC
TCTGCCTTAT GTATTCTTAA GGTAGAGGAA AGGAGAGGAG AGAAGAAGAG TACAAAGTTC
ATGAGAAAGG GAAGTCTGAG GTACATCTCT AAGGTAATAG TCTCTAACAC CTTATCAGGT
GCAGGTGTTG GATTGGCTAT TCCCCTTCTT CCTCTCTGGT TCAATCTACG CTTTCATGCA
TCTCCCTTGA TAATAGGGGT TATCTTCACG GGGGCGTCCT TGAGCACCTC CTTAGGGTCC
TATATTGCCA CTCGTATCTC GAGAAATCCC CTTAGGTTGG CATCCCTAAC CAGGATAATG
AACGGTGGAT TTCTCCTGGC CATGGCAATC TCCCCGTTCC TTCCCCTGGC GGGAGCGCTT
TACGTAGTGA GGGGGTTTAA CGCTGGTGTA GGTATGCCCA ATAGGACCGC AATAAACGTA
AGAGGGGTCT CAGAGGACGA TTTCGGTACC GCGTCAAGTC TTCAAGGAGT CGCCACACGT
CTGTCGCAAA TGAGTTCAGG ATTAAGTGGA TACCTTCTTG AGGAAAGCTT TGCATTACCG
CTTGAGGTTG GAGGAGTGAT GCAAGCTCTA GGTGGGATTT TATACTACAC ATTGTTAAGG
GGAAAGGAGG AGAGAAGGGA GGAGAAACCT AAGACCGTTT AG
 
Protein sequence
MDSFNWLLLS RALRSIGIMF VTISSSLYLS TLGLSPVIIG LVFLGMTGYI AGFSLSLGML 
GDRVGYKKSL ILGDLIPAIA LILLISTRNP LVVIPSAIIT GLGGTAGGAR GAFSPGLTAL
VARNWKEDQE RVRRLGKLTS ISALAGAGGG ILLSFHDYLP FGNVNDFRFL FGVASGLLFA
SALCILKVEE RRGEKKSTKF MRKGSLRYIS KVIVSNTLSG AGVGLAIPLL PLWFNLRFHA
SPLIIGVIFT GASLSTSLGS YIATRISRNP LRLASLTRIM NGGFLLAMAI SPFLPLAGAL
YVVRGFNAGV GMPNRTAINV RGVSEDDFGT ASSLQGVATR LSQMSSGLSG YLLEESFALP
LEVGGVMQAL GGILYYTLLR GKEERREEKP KTV