| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1325 |
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| Symbol | |
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| ID | 5104576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1304440 |
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| End bp | 1305978 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640507214 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001191407 |
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| Protein GI | 146304091 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00455821 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGT ACCTCCAGAG TTACATAAAT GGACTCGAGG AGAGACCAGA AATAGTAGAC
GATCCATCTA GGTATAAGGG GTCTAAGGTT TTCAATATAA TCTACAAGGT ATCCGATTTA
ATTTTCATCC ATGCCCTTAG CAGAAGGTCG GATGACGGAT ATTATCAATA CTTCGTGATA
GAGCCTCCAA GACCTCCAGC AAGTCTCCTT GAGGACGTGG AAATACAGTT TGCCAAATTA
ATTAACTACA AAGAGAAAGT ACCTGACGTT TTGCAAGAGA AAGAGAAGAA GATGAGAGCT
CTTCTGGAAA AGATAAAAAC TAAGGGGTTT AACAGAGAAT ATATTATCTA TCATTTTATC
AGAGATAAAT TGTATACTGG GCCTATAGAG CCTCTGATAA GAGATCCGTT CATTGAGGAT
ATAAGCCTCC CAGGGTTAGG GAGCGTATAC ATTGTCCATA AGTTATTTGG ACCCATGAAG
ACAAATATAA GGATAGAAAA TCAAGAAGAG CTAGACGAAC TGATTGTCAC TTTGAGCGAG
AAGACGTTAA GACCAGTTTC GCATAATAGG CCCATCATAG ACGCAGCCCT TCCCGATGGC
TCTAGGGTAA ACTTCGTTTT TGGGACGGAC ATAAGTAGAA GGGGCTCCAA TCTGACCATA
AGAAAGTTCA GTAAGGTTCC AATGAGTATA ACTCAAGTGG TAGCCAGCGG TACCATGTCA
GCAATACTGG CAGGGTATAT CTGGATGTTG CTAGATGAGG GGATGAACCT ATTTGTGTGT
GGGGAAACAG CGTCAGGGAA AACGACGTCA CTTAATGCAA TTACTGCCTT CATTCCTCCC
AATCTGAAGA TAATTACAAT CGAGGACACC CCAGAACTTA CAGTTCCTCA TGAGAATTGG
GTGGCTGAGG TAACTAGGGA AACTGGAGGC GAAGGGACAG TAAAGCTATT TGATCTGCTT
AAGGCGGCCC TAAGACAGAG GCCCAACTAT ATTCTAGTGG GAGAAATAAG GGATAGGGAA
GGTAACGTAG CGTTTCAGGC AATGCAGACA GGCCACTCAG TTATGGCCAC ATTTCACGCA
GCTAACATCA GGACTCTAGT ACAGAGACTG AGCGGTTATC CAATAGAGGT ACCCAAATCG
TATATCAATA ATTTGAACCT AGCCCTGTTC CAGAGCGCTC TGTACGATAA GAAGGGAAAT
TCTGTGAGAA GGGTCATAGA GGTGGATGAG ATCATAGATG TTGATCCAGT GACTAGCGAT
GTCATATTTG TCCCAGTCTT TACCTATGAT CCCATCTACG ACCAGATTAA CTTTGCCGGT
AAGGGATCCT CGTTTCTCAT CGAGAACAAG ATAGCGGTGA GGAGGGGAAT AGATAGGAGG
AACATGAACT TATTGTATGA TGAGCTCAAT CTTAGGGCAC AATTTATCAA GACACTTGTG
GAGAAGAAGA TATTCAATTA TTTTGATGTC TGGAATTGGA TTCTTAAATC TAGACAAATG
GGATTGGAGG AGGCGATCAG GCAAATTGCA GTTACGTAG
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| Protein sequence | MSEYLQSYIN GLEERPEIVD DPSRYKGSKV FNIIYKVSDL IFIHALSRRS DDGYYQYFVI
EPPRPPASLL EDVEIQFAKL INYKEKVPDV LQEKEKKMRA LLEKIKTKGF NREYIIYHFI
RDKLYTGPIE PLIRDPFIED ISLPGLGSVY IVHKLFGPMK TNIRIENQEE LDELIVTLSE
KTLRPVSHNR PIIDAALPDG SRVNFVFGTD ISRRGSNLTI RKFSKVPMSI TQVVASGTMS
AILAGYIWML LDEGMNLFVC GETASGKTTS LNAITAFIPP NLKIITIEDT PELTVPHENW
VAEVTRETGG EGTVKLFDLL KAALRQRPNY ILVGEIRDRE GNVAFQAMQT GHSVMATFHA
ANIRTLVQRL SGYPIEVPKS YINNLNLALF QSALYDKKGN SVRRVIEVDE IIDVDPVTSD
VIFVPVFTYD PIYDQINFAG KGSSFLIENK IAVRRGIDRR NMNLLYDELN LRAQFIKTLV
EKKIFNYFDV WNWILKSRQM GLEEAIRQIA VT
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