Gene Msed_1324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1324 
Symbol 
ID5104575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1303026 
End bp1304453 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content42% 
IMG OID640507213 
Productflagella assembly protein J-like protein 
Protein accessionYP_001191406 
Protein GI146304090 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1955] Archaeal flagella assembly protein J 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000149145 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCAGTTAC GTAGTCAAGA CGAAGTGGAC TCCAAGTTTA TCTTTTTAGT AGCGTACATA 
CTGGCCCTGT TCACTGCGGA TCTTCCGCCA GAGAGCATAG TGGTGACACT CTCTGGCCTT
AAGTACTTTG GAGAGTACTC CAAGACCTTT GGTAGACTGG CCACGCTAAT TCACGGATAT
AGATACAAGT TCTCCAACGC AATCAATATC GTGAGTACTA AGATTCACAT TAAACCTTTC
AGAGAGTTCA TAGTTAGGTT TTCACAGGCC CTCTCCCACG GGGATGAGAT GATCTCTTTC
TTAAACAGGG AAATAGACAT GACATTAAAT GATTATAACG CTGACATGAA CAGGAAAATA
GAATCAATGA ATAATTTTCT TGCAATTTAT GGGAGTTTGA GTAGCTCGCT AGTCTTCCTG
ATGGTAAACT TGACACTGGT ATCTATCCTG TTTGATGTGG GAACTTCAGT TCTTCAACTG
CTTTCCATGG CAATGGTTGC CGTGATAGGT CTACTTACCC TAGTGGTTTA CGTGCTATAT
AAACCAGAGA TTTACGTGAT CCTGAAGAGG AATGAGAAAC TGGTTGCTGT AATAGGGTTG
CTCTTATCCA TGACAATAAT GCTACTTCAA AGAAATTATG TTGCTGTGGC CATAGCGGGA
GGAGTGTTAA TAGGAACAGG AATGTTTTTC AGAATGAAGG AGAGAAGACT TAACATATTA
GAAAGACATT ATGTGGCATT TGTCACCTAC TTTTCCAGGA CCTATCATGT AGTCAACAAT
TTAATGGATA CTTTCCTCAG TGTGATGAGG GGGGATCTGG GGACCATGAG ACCTCTGGTT
TCATCTTCCC TAAATAGGCT CAAATTTGGC GTGAGAAAGT CATTAATTTT TGAGATGATG
GGTGAGGAGA GCGGTAGTGT TTTGATTTTG ATGATGAACA GAATTATATC GGCTACCGTG
GAGTTAGGAG GTAATGTAAA AGAGGTGGGC GAAACTGTCT CAAGGATAGG GACTACACTG
CTCAACCTTA GGGCTAGAAG GGAGCAGAAC GGTAGAGCCT TCGAAGCCTC GGTCTTCGCC
ATGCAGGGAG CCAGTTCGGC TATAGGTGGT TCGCTCTTGG CGTTAATCCA GGTATTCGAG
AATATTTTCA GTACAAATGT TATTAACTCA ATTTTCACTC TGGGACAGGT TAGTATTCCT
CAGCTATCAC TGCTTCTCTT GGCTATCCTA GTTGCGCTGT CCTTTGCTAA CGGAATTTCT
ATTGCAATCG CATATGGTAA GACCTTCTAT TCCTCCCTTT ACTTTGTGGG AATACTTCTT
GTGATTACTG CTCTCAGTTT CCATTTCACC TATGTTCTGA CTCAGGGAAT ATTCTCAGGG
GTATTTCAAG GATTACCAAC AGTAACTAGC ATTCCAGGCA ATATCTGA
 
Protein sequence
MQLRSQDEVD SKFIFLVAYI LALFTADLPP ESIVVTLSGL KYFGEYSKTF GRLATLIHGY 
RYKFSNAINI VSTKIHIKPF REFIVRFSQA LSHGDEMISF LNREIDMTLN DYNADMNRKI
ESMNNFLAIY GSLSSSLVFL MVNLTLVSIL FDVGTSVLQL LSMAMVAVIG LLTLVVYVLY
KPEIYVILKR NEKLVAVIGL LLSMTIMLLQ RNYVAVAIAG GVLIGTGMFF RMKERRLNIL
ERHYVAFVTY FSRTYHVVNN LMDTFLSVMR GDLGTMRPLV SSSLNRLKFG VRKSLIFEMM
GEESGSVLIL MMNRIISATV ELGGNVKEVG ETVSRIGTTL LNLRARREQN GRAFEASVFA
MQGASSAIGG SLLALIQVFE NIFSTNVINS IFTLGQVSIP QLSLLLLAIL VALSFANGIS
IAIAYGKTFY SSLYFVGILL VITALSFHFT YVLTQGIFSG VFQGLPTVTS IPGNI