| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1305 |
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| Symbol | |
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| ID | 5104556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1284056 |
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| End bp | 1285099 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640507194 |
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| Product | high-affinity nickel-transporter |
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| Protein accession | YP_001191387 |
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| Protein GI | 146304071 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3376] High-affinity nickel permease |
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| TIGRFAM ID | [TIGR00802] high-affinity nickel-transporter, HoxN/HupN/NixA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.827623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTCA AGCTGAAGGT TGGCGCATTC TACGCCTTAA ACTTGACCAT ACTTGGAATC
CTCTTCCTGG AACTTGTAAA ATTTTCACAG GAGGCGAGAT CATCCTCGAT CTCGTTCTTC
TCCCTGGGTA TACTGGCTTT CTTCCTGGGA TTGAGGCACG CAGTTGACGC GGACCACTTG
GCAGCAATAG ACAACTCGGT CAGAAAACTG ACGCAGGAGG GGAAGAGCTC TCTCCTGGTT
GGAACCTTTT TCTCACTTGG TCACTCCAGC GTGGTCTTCC TCCTGTCGTT TGGACTTGTG
CTGAGCACCA GATTGGTGGA GGGAAGCATT CCAAGCCTTG AGAAACTCGG TTCCTTCCTC
GGAACCGCGA TCAGCGGAGG GGTTCTCTAC CTGTTGGGGT TTCTGAACTT CTTCGTTGCC
CTTGAGATAT ACCAACTATA CAAGGGTGTC ATGAGGGGAG AGGTAGACGA GGAGAGGGTG
GATAACGTGC TACAGAAGAG AGGGTTAATG GGAAGGTACT TCAGAAGGCT ATTCTCGCTC
ATTAAGAATC AGTATTACCT CTACCCCATA GGTTTCCTGT TCGGGTTAGG GTTTGATACG
GCCTCAGAGA CCGCACTCCT TGCCATCACC GCGACCTCAT CTGGTCTCTT CAGTGGAGTA
TCCACATGGT ACGCCCTCCT ATTCCCAGCC CTATTTGCCG GTGGTATGAC TCTCATAGAC
TCGACCGACG GATTCTTCAT GAATGGGGCG TACAGGTGGG CCTTCTCCGG AGATCCACTT
AGGAAAATCT GGTACAACCT CACCATGACA GTGATCTCAG TTATGGTGGC GTTCGTGATT
GGATCCCTGG AGTTGTTGGG TCTCCTTCAG TCAGAGCTCG GACTTCAGGG TGGGATGTGG
AGTTGGATAG CCTGGGTGAA TGGAGGTGCA GAGTGGGGCT ATGTGGGGGT CTTCATAGTC
TCGGTTTTCG TGGTAGTCTG GAGCCTATCT GCGACGATTT ACAGGGTAAG GGTGAGCAGA
CTCTCCAGGT CAATGAGCAG GTAA
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| Protein sequence | MDFKLKVGAF YALNLTILGI LFLELVKFSQ EARSSSISFF SLGILAFFLG LRHAVDADHL
AAIDNSVRKL TQEGKSSLLV GTFFSLGHSS VVFLLSFGLV LSTRLVEGSI PSLEKLGSFL
GTAISGGVLY LLGFLNFFVA LEIYQLYKGV MRGEVDEERV DNVLQKRGLM GRYFRRLFSL
IKNQYYLYPI GFLFGLGFDT ASETALLAIT ATSSGLFSGV STWYALLFPA LFAGGMTLID
STDGFFMNGA YRWAFSGDPL RKIWYNLTMT VISVMVAFVI GSLELLGLLQ SELGLQGGMW
SWIAWVNGGA EWGYVGVFIV SVFVVVWSLS ATIYRVRVSR LSRSMSR
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