| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1289 |
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| Symbol | |
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| ID | 5104701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1264979 |
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| End bp | 1266418 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640507179 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001191372 |
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| Protein GI | 146304056 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCCA ATATGAGGAA AGTGATACCC TTGTTACCGA GAGTTAATTA TAAAAAGGCA
GTTAGGGGGA TAGCCAAATC TGTTGTAATA GGGATAGTAA TTGTAATAAT AGTTATAGGT
GCAGTGGCAG CTATAGAGTT AACAAGTCAT AGGACAACGC CCCCAAGTGT AACTAACACC
TCAACTACCA CAACGACTCC TCCCCCTGTT ACTGGGAATG TGACCATAAC CTATTTCGAC
GACCTCTCCC AGTCAGAGGC TTCAGTAATG CAGAACGTAA TCATTCCGCA ATTTGAAAAG
GAATATCCCA ACATTCATAT CAACTATGTG GATGAAGGTG CAACGGACAT CGTGAAGAGT
GTTGAGGAGC TTGAGCTAAG TGGTAACGTT GGACCTGTAA TAATTGGAGA GGATAACCTG
GTTATTGGGG AGCTTCTGAA CGGGAACTAT TTGATGAACC TCACGCCATA CACGAGCGAA
ATACTTCAGA ACGTCTCCCT CATACCCTCA ATGGTGAGCC TCGTAAAGTA TGAGCAAAGT
GTTTACCACG GGGAGTTCTT CATACCATTG AGGGGTAACA TACCCCTAGT GTGGTATAAT
GCAACGCTGT TCCAGGAAAT GGGAATAACT CCGCCTCAGA ACTGGTCTCA GCTAATGCAG
GTAGCCTCTG AGATAAAGGC TAAGACTGGT GTGGCCCCAA TCATGTTCCA GGGTCACGGC
GGAGCCAGCA CCTACACGGA GCTTTACCAA TGGATGGTAC AGGCTGGAGG AAATCCATTC
CTCTTCAACG ACTCCGGTGA TGTGTTAGCC TTCGAATATC TCTATAACCT CTCCAACTAC
TTCACTCCGG GTTACGTCCA TGGGTACTGG GGTAGCTATA AGGGACTGTT AAGTGGAGAG
TATTACATGA TTGACTATCA ATGGCCCTAC ATCTATAGCA CCATGGCTAG TGAAGGCGTA
AACATGAGTC ACATAGGCTT CTATCCGGGC CCTGTGGGAC CTGCTAACGG AGACCATCTG
GTGGGCGGAG ATGTCCTGGC CATACCTAAG GGAGCAACCG ACATTCCTGC ACTAATAGAT
TTCGCGAGGT TCCTCCTATC GACGCAGGTT CAAAGGGACT TTATCATATA CTTGTCCTGG
CCAGCAGTAA ATCAGCAGGC CTACAACAAC TTGCCAAGCA ATATCAGCGC ATTGTACAAG
GCAGAGGAGG AGGCCATGAG CAACGCGTTC TTCAGGGAAC CCGTTCCATG GATAACTGTG
TGGGGACAGA TCGCTGACAA GGTATTTGAC ACGATTATTG TAGATCATGC ACCCTACTCC
CAGATACCCA GCATCCTAGG CCAGGCGAAT CAGGAGATGT ATAACTACCT AGTCCAGAAC
TATAACACCA CTGTGGCTCA GCAATACGAG CAGGGAGTCT ACGGTCCATT GTACGGGTGA
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| Protein sequence | MKSNMRKVIP LLPRVNYKKA VRGIAKSVVI GIVIVIIVIG AVAAIELTSH RTTPPSVTNT
STTTTTPPPV TGNVTITYFD DLSQSEASVM QNVIIPQFEK EYPNIHINYV DEGATDIVKS
VEELELSGNV GPVIIGEDNL VIGELLNGNY LMNLTPYTSE ILQNVSLIPS MVSLVKYEQS
VYHGEFFIPL RGNIPLVWYN ATLFQEMGIT PPQNWSQLMQ VASEIKAKTG VAPIMFQGHG
GASTYTELYQ WMVQAGGNPF LFNDSGDVLA FEYLYNLSNY FTPGYVHGYW GSYKGLLSGE
YYMIDYQWPY IYSTMASEGV NMSHIGFYPG PVGPANGDHL VGGDVLAIPK GATDIPALID
FARFLLSTQV QRDFIIYLSW PAVNQQAYNN LPSNISALYK AEEEAMSNAF FREPVPWITV
WGQIADKVFD TIIVDHAPYS QIPSILGQAN QEMYNYLVQN YNTTVAQQYE QGVYGPLYG
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