| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1269 |
|---|
| Symbol | |
|---|
| ID | 5104682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1244307 |
|---|
| End bp | 1245812 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640507160 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001191353 |
|---|
| Protein GI | 146304037 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGT TCCTCAGACA GTCCTCCGGG CTCGTGAAAC AGGCCACCCT CAAGGATCTC
GTAATGCTCA ACGTTGCAAA CATGGGAGCA GGGCTGGCAG TTTTCCAAGG GATTTCGCCC
TACATAGTTC CTGGGGCAAG GCTGTGGGTG GCCTCTCTCC TCACCTTCCT TATCTCGCTT
CCGCTCGTCC TCCTGTACAC GTCACTCATG ACAAGGATGC CAAGGACGGG TGGGGATTAC
GTGTGGTTAT CCAGGAAGTT AAATGGTGCC CTAGGTAGCA TCATGGGAAT AGCCATAGCC
TTCAACATGC CTCCCTTCTT TGCGTTATCT GCCTTCTTCT CGGTGTCCGC GATCAACGCA
GTGCTCTCAG AGATCGGGGT GCTGGACAAC GTGAAATCGT TGGTCTACCT TAGCAATAAC
GTGTTCGTGA ATCCCTACGG AACCCTCACC CTGGAGCAAG AACTCCTGAT CTATGGACTG
TCAGCTCTCG CGTTTCTAGT GATCATTTTC CTGAACATAG TGAAGCCGAG GTGGGGATAC
ACGTTAACGA CGTGGCTTGG AATCTTCGCT TCTGCGACCC TGGCACTCGG GGTTGTGATG
ATCCTAGCGA ACACCGGCGA TTTTCACCAG GCCGTGGAGG TCTTCCTCTC TAGGGAGGGC
GTTACGCCAA CTAGTTATAC TGGTCCGTCG TTCAGCTGGG GGTCCACAAT TTACATGATT
CCCTACTTCG CGTCCTATGC GTATATCTGG CTCTACGCTG GACCCGCGGT TGCAAGTGAG
GCTAAGGGTA ACGTGAAACT TAACCTCGTG CTCGCAAGCC TACTAACCAC GGCAATGATT
ACAGTACCCT TCCTGGTCAT GGACCTAGTG GGAGGGTACG CCTATAATGC CTCCCTCTAT
CCGTCTTTCA CCTACAACTT CTGGACTGCG GCAATAGCAG TTTCGCCTCC CTTGATACAG
TGGATACTGG GGCTTGGTCT TATCTCCTGG AACTTCTTTG TCATGGCCTT CGGAGTCGTC
GTGTTCTCGA GGTACGTCTT CGCGTTCTCC TTTGACAGGG TCTTCCCTAG CTTCTTTGCC
AAGTTAAATA GGGCATCTTC TCCTTATCTG GCCCACATAC TTGACCTTGT CCTGACGCTG
ATCTTCCTCG CAATTCCGCT GATCTCCGTA AATGGTGCTG AGTCGCTGTA TGCGTACACG
CCATTAGCTG CTATCTACCT CTTCCTGGTA GGATTAACGG GAATGAAGGT GGGGAAGGAG
GAGAGGAGCA GGCCTTTGAT GATACTGGGA GCGCTTTCGT CTGCCTTTAT GGCCTTCCTT
GCGTACGAGT CTGTGACCAA TCCCTTCTTC GGGGTAGTCT CTAGCTCGGG GATAAACGTG
ATTGGTACCG GGTACCTTGT GGCACTGGTC GGGAGCGGGG CAATAATTTA CGCCATCGCA
AGCTGGCTAA GGAGGAGACA AGGCATTGAG CTCAAGGAAG TGTTTCAAGA GATTCCGCCC
GAGTAA
|
|---|
| Protein sequence | MSKFLRQSSG LVKQATLKDL VMLNVANMGA GLAVFQGISP YIVPGARLWV ASLLTFLISL
PLVLLYTSLM TRMPRTGGDY VWLSRKLNGA LGSIMGIAIA FNMPPFFALS AFFSVSAINA
VLSEIGVLDN VKSLVYLSNN VFVNPYGTLT LEQELLIYGL SALAFLVIIF LNIVKPRWGY
TLTTWLGIFA SATLALGVVM ILANTGDFHQ AVEVFLSREG VTPTSYTGPS FSWGSTIYMI
PYFASYAYIW LYAGPAVASE AKGNVKLNLV LASLLTTAMI TVPFLVMDLV GGYAYNASLY
PSFTYNFWTA AIAVSPPLIQ WILGLGLISW NFFVMAFGVV VFSRYVFAFS FDRVFPSFFA
KLNRASSPYL AHILDLVLTL IFLAIPLISV NGAESLYAYT PLAAIYLFLV GLTGMKVGKE
ERSRPLMILG ALSSAFMAFL AYESVTNPFF GVVSSSGINV IGTGYLVALV GSGAIIYAIA
SWLRRRQGIE LKEVFQEIPP E
|
|---|
| |