Gene Msed_1237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1237 
Symbol 
ID5103851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1216460 
End bp1217152 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content48% 
IMG OID640507129 
Producthypothetical protein 
Protein accessionYP_001191322 
Protein GI146304006 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGAAA TTAAGGCTAC TGACGACGAG CTCAAGAGAA TTTACGAGGA TATACCTTCC 
AGTTACGATA GGGCAAACAG GTTCATCTCC TTCAATCAAG ACGTTAGATG GAGAGCCAAT
CTAGTTAAGA CTGCATTGAA GTTCTGTCCC AATCCAGGGT CAGTCCTCGA TGTCGCATCA
GGTAAGGGAG AGCTCACATA CGTTCTTAGG AAGTTCACCC AAGCCTACTC AGTGATGGTG
GATTACTCAG AAAACATGTT GAGGCACTCC CTGGTGGAGG GAGATAGGAT TCAGGGCTCT
TTTGACGCGC TCCCCTTCAG GGATAATTCC TTTGACCTTG TGATGAGTAG TTTCGCGCTT
CACGCCTCAG ACAACGTTGA AGCGGTGGTG AGGGAGATGG AGAGAGTCTC TCGTCATGTT
CTAGCGTTCA TTGCCATGGG GAAGCCCGAT TCCGTGTGGA AAAGGGCTTA CGTTGGATTT
TATCTTCATT ACGTGATGCC ATACATTGCC GCGTTGGGTG GAGCCAAGGC CAGCGATTAC
AGGTACATCT ACTATATTTT CAGGAGGTTG TACACTAACT CGTACTACAG GCAACTGTTC
TCTAGACTGC TGAACCTTAG GGTTTACAGG GAGTTAGCAC TCAACCTGTT CTACTTTGTT
GTGGGAGAGA AAAGGGGAGA AGACGAGAGC TAA
 
Protein sequence
MQEIKATDDE LKRIYEDIPS SYDRANRFIS FNQDVRWRAN LVKTALKFCP NPGSVLDVAS 
GKGELTYVLR KFTQAYSVMV DYSENMLRHS LVEGDRIQGS FDALPFRDNS FDLVMSSFAL
HASDNVEAVV REMERVSRHV LAFIAMGKPD SVWKRAYVGF YLHYVMPYIA ALGGAKASDY
RYIYYIFRRL YTNSYYRQLF SRLLNLRVYR ELALNLFYFV VGEKRGEDES