| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1222 |
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| Symbol | |
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| ID | 5103836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1196263 |
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| End bp | 1197663 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640507114 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001191307 |
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| Protein GI | 146303991 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGATA GCTCTAATTT AAGGCAGTCA CCGGAATGGT ACGTGGCCAG AGTGGACAGG
CTCCCTACAT GGGGCCTATC ATATGCCCTA ATATGGGCCA TGGGATTTTC CTTTTTTATA
ACCCTATATG ACGTCATTAA CGTGGGTTTC GCTCTTCCCT ACGTACCCTT CGTGGTAAGC
GCAGCTCAGG CGTCATTAAT AGCGTCGTTG GGTCTATGGG GTTATGTTGT GGGCGCTCCA
ATCTTTTCAT ACATTGCGGA TGTGGTGGGA AGGAGACCCA CCCTAGTCTT CACTGCCCTG
TTGACGGCGT TAGGAAGTTT CGGGGATGCC CTATCCGTGA ATTATCCCAT GCTGGCCGTG
TTCAGGTTCA TTACGGGGAT GGCCATAGGG GCTGACTTGG TATTGGTCAT GACCTACATG
GCAGAGATGT CCCCTGCCGC TAAAAGAGGT CAATACACGA ACCTTGCCTT TATAGGGGGT
TGGGCTGGAA TAGGAATTGG TCCCTTCATC GCTGCCCTCA TTGTTACCTC TATACCTTCC
ATAGGATGGA GGATAGTTTT CGTTGTGGGA GGGATTCTCG CTGCCCTTGC TCTAGCCATA
AGGGCATATG CTCCTGAGAC GGTGAGGTTC TTGGCCATGA AGGGAAAGTT CAATGAAGCT
GATAGTTTAG TTGGGCACAT GGAGACAACG TCCATGAAGA GAGCTGGCGT AAATCAATTA
CCTGAGCCCA ACATGAAGGT GTACAATGTA CCCAAGGAGA ACCCGTTCAA GGTTCTCGCT
AAGCCGAAGT ATCTTAAGAG GCTCATAATC CTGTTCCTCC TGATGTTTAC CATATACTTT
ATGGATTACC CATTCCTTGT GTTACCAGAA ACATGGGTGA AGGATGTGCT GGGATATAGC
GGGTCCCTGT TCTCCTCCGC TGTCTTCTAT TTTGGGTTAG CCGGGATTGG GGCCTTCCTA
GGAGCTATAC TTCTAAGGTT CATTATTGAC AGATTTGATA GGAGATACAT GACAGTGTTT
GGAGTTGTTG TGTTCACAAT TGGTACTGCC ATAATGGCAA TTGGAGGAAT TGCAAGAAGC
ATTCCGACAT TCTTCATTGG ATCGTTCATT GCCGAGCTCG TGGGAGTTGG ATGGTTCAAC
GTTTATTATC TGCTATGCAG TGAGAACTTT CCAACAAGTG CAAGGGCAAC TGGTTACGCC
ATTACAGACG GTATTGGACA CGCAGGAGGA GCAATTGGAT TGCTCACGGT TTTCCCGCTA
ATCCCGATTC TAGGTAATAT AGGGGCTTGG ACGGTACCGT GGATACCTGC AATAGTGATG
GCGATAGTTA CAGTGTTTAC TCTGCCAAAG ACCGTGAAGG TTAGACTAGA GGAGGTAAAT
GAAGCTACGG ATCGGGTGTG A
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| Protein sequence | MADSSNLRQS PEWYVARVDR LPTWGLSYAL IWAMGFSFFI TLYDVINVGF ALPYVPFVVS
AAQASLIASL GLWGYVVGAP IFSYIADVVG RRPTLVFTAL LTALGSFGDA LSVNYPMLAV
FRFITGMAIG ADLVLVMTYM AEMSPAAKRG QYTNLAFIGG WAGIGIGPFI AALIVTSIPS
IGWRIVFVVG GILAALALAI RAYAPETVRF LAMKGKFNEA DSLVGHMETT SMKRAGVNQL
PEPNMKVYNV PKENPFKVLA KPKYLKRLII LFLLMFTIYF MDYPFLVLPE TWVKDVLGYS
GSLFSSAVFY FGLAGIGAFL GAILLRFIID RFDRRYMTVF GVVVFTIGTA IMAIGGIARS
IPTFFIGSFI AELVGVGWFN VYYLLCSENF PTSARATGYA ITDGIGHAGG AIGLLTVFPL
IPILGNIGAW TVPWIPAIVM AIVTVFTLPK TVKVRLEEVN EATDRV
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