| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1198 |
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| Symbol | |
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| ID | 5104494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1169575 |
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| End bp | 1171437 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640507090 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001191283 |
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| Protein GI | 146303967 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1955] Archaeal flagella assembly protein J |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.665055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCCA AGACCAAGGT AAAATCCACT AGTATTGTGA AGACCAAGGA TCTTAACTTC
GTTGTAATGT TAGCGATTGC CTCAGTAGCG ACTGCCCTAG TTCCTCTCCT GTTCTTCCTC
AAGGTCACGA TCCTGGGCTT CCCTGCCTGG CTCGTTCTAC TCCCGTTACC GGTGTATGCC
TGGCCTCCCG CAATTCACAG AACACTACAC AGGGACGAGA CAATCTTCTC CATGATGGAG
AGGCTGGTGG CTGGAAGTAA GGTGTTGGAG TGGCCAGGGA GATGGTGTAA TGAGATGGTT
AACCTATATT ACGTGGGCCT GCCGGTCTCC GCGATGCTCG GAATGGCGCT CATGATGATG
TATCCACTTG CATCCCCAGC AGGAGGTGCC ATAGTCCTAG TGACCTACTT CCTACCTTGG
ATGAGATACA TGGACATCAG GTCAACCCTC AAGAGGCAGG TTGAGCTAGA GCTCCCCGTT
GTGTCTCTCC TGATGTGGGG TCTCTCAGAG ATTGGATATG ACGTCATGAG GATAATTAAC
GCCCTTAGAA AGGAGACCAG CGAGTTAGTT GCCATACCCA GGGAGTTCGC AAAGATCCAC
CGCGACTTCA CTACCTTTAA CCTTTCCCCA GATGAGGCCG TTCTGAGGGA GACGGACAAT
CACCCCTCGA AGCTCTTCGA GAGGTTACTG GGCGGAGCAA TCACGATCTC CTCAATAGGT
GGAGAACTCT CAGTCCACCT GTCCAGGACT ACCCAGGAGA TCCTCGCCTG GATGAAGGAG
ACTTGGGAGG CTTACGGAAG GGCCGTCTCG AACCTTGGGG AACTCTCAAT GTTGTTCCTC
CTCATGGTTC CACTTGTGGC CATATGGTTC GGAATAGTTC AAGGTAACGC GACTTACGGA
GTTGATATGG TGACCTACTT CCTAGTACCC CTGATCGGTG CCTCGCTCTA CTTTTACGTG
TCGCTTCAGG CCCCTCTTGA TAAGGTCCCA GCCAGGGGAA ACCTGAAGAA GGGGTTAGTC
GGGCTCGCCG TAGGTGTCGG AATTGACGCA TTCCTACTAT TCAAGGGAAT TCAGTACGAA
TGGTTGCTCT TGGCGCTACC AATTATGGGC TTCTCCCTTG GGTATGGTTA CTCTGCCCAG
AGGGCAATCC AAAGGAAGAA CAGCATAGAG GCTCATATGG CCGTCTTCGT GAGGTCTATT
GGGGAACATA TTAGGACAAC TGGGGACAAC CTTTTCACCG CAATCTCAAA GCTCATAGGG
AATAAGGGAT TCGGGAAGGA GATCAACATG ATGTTGAAGA GATATCTTAT CCTGTCCACC
GTAGAGGAGG AACCTGTCCC CGAGTCCGAA TCATGGATGG GTAAAACCAT CTTTGAGATC
ATGGTTAAGG CTGACAGGGA AGGTGTTCTC AGATATGACA TAATGAAGAG ATTGGCCGAG
TTCGCAGACT CATACTACGA CGCCATTCTT GCCAAGAGGA GGGGACTTTA CATGTTCCTT
GGATCTGCCA TAGCCTCCCC ACTAATCCTA GTCGCCATGA TAGCCCTGAC CTACTTTGTG
TTGAACCAGA TCTCGAGCCT AGCCCAGATA CCGGCAATAC AACAAACGCC TGGAGTCCAG
TTCCCACCTC AAGCCCAGGC CCTACTTCAG TTCTTCTCGG TGTTCCAGAA CGTGGGACAG
GTCATACAAT CCATGATCCC TGGACTTGAG GTTGCCATCG TTGAGACAGG GATCATATAT
GGAATCCTAT TGGCCAAGGG TTACGACGGA ACGGTTAGGA ACACGTTCAG GATATTTGAG
CTCATGGTGG TCTCCGTGAT AGCTGTAATG ATATTCCAGT TTATAGTCCT TAAGATCATC
TAG
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| Protein sequence | MIAKTKVKST SIVKTKDLNF VVMLAIASVA TALVPLLFFL KVTILGFPAW LVLLPLPVYA
WPPAIHRTLH RDETIFSMME RLVAGSKVLE WPGRWCNEMV NLYYVGLPVS AMLGMALMMM
YPLASPAGGA IVLVTYFLPW MRYMDIRSTL KRQVELELPV VSLLMWGLSE IGYDVMRIIN
ALRKETSELV AIPREFAKIH RDFTTFNLSP DEAVLRETDN HPSKLFERLL GGAITISSIG
GELSVHLSRT TQEILAWMKE TWEAYGRAVS NLGELSMLFL LMVPLVAIWF GIVQGNATYG
VDMVTYFLVP LIGASLYFYV SLQAPLDKVP ARGNLKKGLV GLAVGVGIDA FLLFKGIQYE
WLLLALPIMG FSLGYGYSAQ RAIQRKNSIE AHMAVFVRSI GEHIRTTGDN LFTAISKLIG
NKGFGKEINM MLKRYLILST VEEEPVPESE SWMGKTIFEI MVKADREGVL RYDIMKRLAE
FADSYYDAIL AKRRGLYMFL GSAIASPLIL VAMIALTYFV LNQISSLAQI PAIQQTPGVQ
FPPQAQALLQ FFSVFQNVGQ VIQSMIPGLE VAIVETGIIY GILLAKGYDG TVRNTFRIFE
LMVVSVIAVM IFQFIVLKII
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