Gene Msed_1182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1182 
Symbol 
ID5104478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1152757 
End bp1154175 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content51% 
IMG OID640507074 
Productamino acid permease-associated region 
Protein accessionYP_001191267 
Protein GI146303951 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0531] Amino acid transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.616059 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATAAGG ACGAGTCAGG ACTAGCAAAG GACGCCATAG GGCTCTGGGG ACTTGTTTTC 
TACTCTATAT CAGTGATTTT GCCCGGGGGA GCCTTTGCCA TAACCGGGGC TGCAGCCATT
ATTTACGGTG GGTACTCGGC TCCGCTCGCC TTCATTCTCG GAGGGTTGGC CGTGTTCCTA
TCTGTGATCC CTGTCTACTT CTTTAGTCAG TACATCTCCA GCGCTGGGGG TTATTACAAG
TACATTGAAA GCTCGATCCC AAACAAGTAC CTGTCGAAGA GTGTGGGGTT CTGGCAAGTG
TTTTGGGTGG TTGGGGATAT GATCGCGGCA TCCTCGGTGA TTCCGTGGTT GAGTTGGGCC
TACTCTGCCC TGTTCCACGT GTCTCTCCCC CTTGACGTAG TGTTGCTACT TAGTCTAGTA
ATTCCTGTGT CCTGCCTGCT TGTTAGTTAC TTCGGGATAA GCCTATCATC AAGGATTACC
ATTGTGGTTG GAACTCTTCA GATAGCCTTT TTCTCTGTGC TGGGGGTCGC CCTCCTCTTG
AAATCTAGGC ATCCTTCACC TGTCTTAAGA GTTGAGGACT TTCACAGCCT ATTTCTCTCC
ATGGTTGTGG GTGCTCTCCT GGCCTACAGC GGTTACGGAT CAATCATATC CCTTGGAGAG
GAGGCTAAGT TATCCAGGAA AACCATAAAG AGGGCTGTGA TGGTGTCAGT ATCCATCATG
GTCCTGTTCT TCAGCTTCGT CGTTTACAGT ATTGTGGCCT CAGCGGGCCC AGATCTCCCG
GTTGCCCAGG CCCAGTTGGC CCCTGGTATA TACGTGACAG AGGAGCTGTT GGGCGAGAGG
GTCTCGTCAC TGGCCCTCGC CATTGTCCTG TTTTCCCAGG TGATCACATC TGTGCTTTTC
GGGAGCAGCG GTGCTAGGAC AGTGTACAGC CTCGCTCAAG ACGGGTTTTT TCCTGATTTC
CTCAAGGTCA CTAGACGAAA CGGAAGTCCC TTCAGGGCTA CAGCCTTCAT TATCGGCCTT
GGAATGATCG GGTCACTTTC CACAATAGTT CCCCTGATCC TAGACTACGG AGTCGGGAAG
GGGCTGTTTT ACAGCTTTAC AATTTGGGCC ACCGTCATAA CGGTGCTCTT CCTGTTCATT
CAGATCGTCA CGAATATGTC CTTACCCTTT TTCCTGAGAA GGAGAGGGAT GAAAGTAAAG
GTCCTCGATC ACTTGTTGCC GTCCATCACT GGATCCTCAA TCCTGGTTGT GGCCCTTTAC
TATTCCCTTC AGAACCTGGA TCCTCCCCTC AACCTGATTT ACTTCATACT TGTGGGATTG
GTAATTACAC CCTTGGTCAT GGTATACGCT CTTCATGATT CAATTGAGGT TGAAGAGAGT
CCCGGAGGGG CAAGACCCAA TCATGAGGGT CTCGGTTAG
 
Protein sequence
MDKDESGLAK DAIGLWGLVF YSISVILPGG AFAITGAAAI IYGGYSAPLA FILGGLAVFL 
SVIPVYFFSQ YISSAGGYYK YIESSIPNKY LSKSVGFWQV FWVVGDMIAA SSVIPWLSWA
YSALFHVSLP LDVVLLLSLV IPVSCLLVSY FGISLSSRIT IVVGTLQIAF FSVLGVALLL
KSRHPSPVLR VEDFHSLFLS MVVGALLAYS GYGSIISLGE EAKLSRKTIK RAVMVSVSIM
VLFFSFVVYS IVASAGPDLP VAQAQLAPGI YVTEELLGER VSSLALAIVL FSQVITSVLF
GSSGARTVYS LAQDGFFPDF LKVTRRNGSP FRATAFIIGL GMIGSLSTIV PLILDYGVGK
GLFYSFTIWA TVITVLFLFI QIVTNMSLPF FLRRRGMKVK VLDHLLPSIT GSSILVVALY
YSLQNLDPPL NLIYFILVGL VITPLVMVYA LHDSIEVEES PGGARPNHEG LG