Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_1182 |
Symbol | |
ID | 5104478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 1152757 |
End bp | 1154175 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640507074 |
Product | amino acid permease-associated region |
Protein accession | YP_001191267 |
Protein GI | 146303951 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.616059 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGATAAGG ACGAGTCAGG ACTAGCAAAG GACGCCATAG GGCTCTGGGG ACTTGTTTTC TACTCTATAT CAGTGATTTT GCCCGGGGGA GCCTTTGCCA TAACCGGGGC TGCAGCCATT ATTTACGGTG GGTACTCGGC TCCGCTCGCC TTCATTCTCG GAGGGTTGGC CGTGTTCCTA TCTGTGATCC CTGTCTACTT CTTTAGTCAG TACATCTCCA GCGCTGGGGG TTATTACAAG TACATTGAAA GCTCGATCCC AAACAAGTAC CTGTCGAAGA GTGTGGGGTT CTGGCAAGTG TTTTGGGTGG TTGGGGATAT GATCGCGGCA TCCTCGGTGA TTCCGTGGTT GAGTTGGGCC TACTCTGCCC TGTTCCACGT GTCTCTCCCC CTTGACGTAG TGTTGCTACT TAGTCTAGTA ATTCCTGTGT CCTGCCTGCT TGTTAGTTAC TTCGGGATAA GCCTATCATC AAGGATTACC ATTGTGGTTG GAACTCTTCA GATAGCCTTT TTCTCTGTGC TGGGGGTCGC CCTCCTCTTG AAATCTAGGC ATCCTTCACC TGTCTTAAGA GTTGAGGACT TTCACAGCCT ATTTCTCTCC ATGGTTGTGG GTGCTCTCCT GGCCTACAGC GGTTACGGAT CAATCATATC CCTTGGAGAG GAGGCTAAGT TATCCAGGAA AACCATAAAG AGGGCTGTGA TGGTGTCAGT ATCCATCATG GTCCTGTTCT TCAGCTTCGT CGTTTACAGT ATTGTGGCCT CAGCGGGCCC AGATCTCCCG GTTGCCCAGG CCCAGTTGGC CCCTGGTATA TACGTGACAG AGGAGCTGTT GGGCGAGAGG GTCTCGTCAC TGGCCCTCGC CATTGTCCTG TTTTCCCAGG TGATCACATC TGTGCTTTTC GGGAGCAGCG GTGCTAGGAC AGTGTACAGC CTCGCTCAAG ACGGGTTTTT TCCTGATTTC CTCAAGGTCA CTAGACGAAA CGGAAGTCCC TTCAGGGCTA CAGCCTTCAT TATCGGCCTT GGAATGATCG GGTCACTTTC CACAATAGTT CCCCTGATCC TAGACTACGG AGTCGGGAAG GGGCTGTTTT ACAGCTTTAC AATTTGGGCC ACCGTCATAA CGGTGCTCTT CCTGTTCATT CAGATCGTCA CGAATATGTC CTTACCCTTT TTCCTGAGAA GGAGAGGGAT GAAAGTAAAG GTCCTCGATC ACTTGTTGCC GTCCATCACT GGATCCTCAA TCCTGGTTGT GGCCCTTTAC TATTCCCTTC AGAACCTGGA TCCTCCCCTC AACCTGATTT ACTTCATACT TGTGGGATTG GTAATTACAC CCTTGGTCAT GGTATACGCT CTTCATGATT CAATTGAGGT TGAAGAGAGT CCCGGAGGGG CAAGACCCAA TCATGAGGGT CTCGGTTAG
|
Protein sequence | MDKDESGLAK DAIGLWGLVF YSISVILPGG AFAITGAAAI IYGGYSAPLA FILGGLAVFL SVIPVYFFSQ YISSAGGYYK YIESSIPNKY LSKSVGFWQV FWVVGDMIAA SSVIPWLSWA YSALFHVSLP LDVVLLLSLV IPVSCLLVSY FGISLSSRIT IVVGTLQIAF FSVLGVALLL KSRHPSPVLR VEDFHSLFLS MVVGALLAYS GYGSIISLGE EAKLSRKTIK RAVMVSVSIM VLFFSFVVYS IVASAGPDLP VAQAQLAPGI YVTEELLGER VSSLALAIVL FSQVITSVLF GSSGARTVYS LAQDGFFPDF LKVTRRNGSP FRATAFIIGL GMIGSLSTIV PLILDYGVGK GLFYSFTIWA TVITVLFLFI QIVTNMSLPF FLRRRGMKVK VLDHLLPSIT GSSILVVALY YSLQNLDPPL NLIYFILVGL VITPLVMVYA LHDSIEVEES PGGARPNHEG LG
|
| |