| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1178 |
|---|
| Symbol | |
|---|
| ID | 5104474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1147605 |
|---|
| End bp | 1148342 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640507070 |
|---|
| Product | glycerophosphodiester phosphodiesterase |
|---|
| Protein accession | YP_001191263 |
|---|
| Protein GI | 146303947 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0584] Glycerophosphoryl diester phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.814209 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATTCA CCATGAAATA TTATCCACTA GTGTATGGAC ATAGGGGTTT CCCGCTGGAG
GCACCAGAGA ACACGATTCC GTCCTTCCTG CTGGCTAGGG AGGCTGGGGC CTTCGGCGTG
GAGATGGACG TCCACATGAC GAAGGACGGC GAGCTCGTGG TAATCCACGA CGACAAGTTG
GATAGGACTA CGACAGGAAC AGGTTACGTC TCACAGAGGA CGTGGGCTGA GGTGAGGCAA
CTTGACGCTG GGCAAAAATT CTCCGAGAGG TGGAGAGGGG TGAAGGTGCC CTCCCTGAGG
GAAGTCCTAA CCCAGGTAAA GGGTGTAAAC TACTACGTTG AGGTAAAGCA TGGATCCAGG
TTCTACCCTG GGATTGAGGA GAGGCTACTG GAGATTCTTG AGGAGACTGG GACCAAGGAC
TTAACCCAGG TCATATCCTT TGATCTCGAG TCGCTCTCGA GACTGAGGCA GATGGACTCT
TCATTGACCC TGGGATTACT AACGTGTAAT GACGTGAAAC ATGCGCTAGT ACTGGCGGAC
GAGATTGGGG TGAACTGGAT TCAGGCAGAG TTTAGCCTTC TGGATAGGGA ACTCGTGGAC
ATGGCCCATG GGAGAGGGTA TAGGGTTGCA ACCTGGACAG TCAACTCCGA GGAGGAGGTA
ATGAAGGCTA GAGAGATTGG CGTGGACTCA ATAACCACCG ACAATCCGCG CATGGCAATA
CGCGTGCTCT CAAGCTAG
|
|---|
| Protein sequence | MIFTMKYYPL VYGHRGFPLE APENTIPSFL LAREAGAFGV EMDVHMTKDG ELVVIHDDKL
DRTTTGTGYV SQRTWAEVRQ LDAGQKFSER WRGVKVPSLR EVLTQVKGVN YYVEVKHGSR
FYPGIEERLL EILEETGTKD LTQVISFDLE SLSRLRQMDS SLTLGLLTCN DVKHALVLAD
EIGVNWIQAE FSLLDRELVD MAHGRGYRVA TWTVNSEEEV MKAREIGVDS ITTDNPRMAI
RVLSS
|
|---|
| |