| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1175 |
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| Symbol | |
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| ID | 5104471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1144036 |
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| End bp | 1145616 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640507067 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001191260 |
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| Protein GI | 146303944 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.312541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAA CCACTGCGGA ACTCCTGATG GACGCGATCT CCTCCCAGGT TGAGGACGTT
TTCGGGATAC CTGGGACTCA CGGCCTCTCC CTCTATGAGG AGATAAGGAA GAGGGTTGAG
AGACAAGAGG TTCGTTACTA CATGCCGAGA CTGGAGTACG GGGGCGCCAT AATGGCCGAC
TACTACGCCA GACTGAAGGG AAACGTGGGG ATCTTCATCT CGGTGAATGG TCCAGGATTC
ACGAACTCCT TGACGGGGCT AGCAGAGGCC TTCTCCGAGG GTTCACCCCT TGTCCTAATC
TCCTTCAACA AGGAGTTCAG GTATAGGCAT AGGAGACAAC TTCACGACAC TGGATACTAC
GACGCACAGA TCGAGGTAGC TAAGCAGATA ACTAAGGCGT CATTCAGGAT CTATTCCCCC
GAGGAGGTAC CCCTAGTCAT GGAAAAGTCC TTCAGGATAG CCCTTCAGGA CAGGATGGGG
CCTGTCTACG TTGAGATCCC TGTTGACGTC CTCGAGGAGA AGGGCGAGGC TGAGGCGGAG
AGAGTGAAGG TTCCAAGGAG TCTGGTCTAC CCTAGTAAGG ACGAGGTGAG GGAGGCCGTG
AACTTTCTGA GTGAGTGCTC CAAGCCCGTC CTACTCCTGG GATATGGAGC GTCCAGATCC
GATCTGGTTC CCTACCTGGA AAAGCTGGGA ATTCCTGTCC TGACCACGGT TAGGGGTAAG
GGAAGCATCC CTGAGAATCA CCCTCTCTAC GCGGGCACAA CCTTCAACCT AGCCGAGATC
CCTGGGGACT GCCTGATCGC CATTGGAACC TCATTCAATG ACCTCGAGAC TAGGAGGTGG
AGCATGAAGC TTCCTAGGAC TCTTCACGTC GATCCGGACC CCTCAGTCTT CAACACCTCC
TTCAGGGCAG ACGTCGTGGT GAGGGCTAGC GCCGAGGCCT TCTTAACCGA GGTGGTGGAG
AGGGTCAAGT TGCCCAGGTG GAGTTTCAGG GTTGAGCGAA GGGAGACCAA CCTGCAGGGT
GAGGGAATAA CTCACGACCT TCTCGCCAAG GTTCTAAACG AGGCGTTAGG GGAGGACAGG
GTGGTGATCG CAGATGCGGG CACAAATCAG GTAATGGCTA TTGACGTACA GGTGTATAGG
CCCAACTCCT ACTTCAACTC CCTGATCTTC AACGCCATGG GTTCAGCTAT CCCAGCGGGT
ATAGGGGCAA AGATTGCAGT CCCAGAGAGG CAGGTCGTGA GCATAATAGG TGACATGGGA
TTTCAGGGGT GTTTTCAGGA GTTGATCACT GCGGTAGAGA ACGGGATCAA CTTCCTGACA
GTCCTCGTGG AGGACGGCGT TCAGCATTTC CTAAGGATGA ACCAGAACAT GAGATATGGA
ACCACCTTCA CGACGCAGGT CTTTCCAATT GACTACACGA AGGTTCTCGA GGGGATTGGG
GTGAAGGTTG TGGAGGCTAG GGACAGGGAA GAGTTGAGGA GGGCAACGGA GGAGGCAGTC
AGCTGGTCAG CCAAGATGCC AACGGTACTC AGGGTTAGGG TGAACCCGAA CAGCGTCCCA
TCTAGGCTAA CGCGAAGATG A
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| Protein sequence | MAKTTAELLM DAISSQVEDV FGIPGTHGLS LYEEIRKRVE RQEVRYYMPR LEYGGAIMAD
YYARLKGNVG IFISVNGPGF TNSLTGLAEA FSEGSPLVLI SFNKEFRYRH RRQLHDTGYY
DAQIEVAKQI TKASFRIYSP EEVPLVMEKS FRIALQDRMG PVYVEIPVDV LEEKGEAEAE
RVKVPRSLVY PSKDEVREAV NFLSECSKPV LLLGYGASRS DLVPYLEKLG IPVLTTVRGK
GSIPENHPLY AGTTFNLAEI PGDCLIAIGT SFNDLETRRW SMKLPRTLHV DPDPSVFNTS
FRADVVVRAS AEAFLTEVVE RVKLPRWSFR VERRETNLQG EGITHDLLAK VLNEALGEDR
VVIADAGTNQ VMAIDVQVYR PNSYFNSLIF NAMGSAIPAG IGAKIAVPER QVVSIIGDMG
FQGCFQELIT AVENGINFLT VLVEDGVQHF LRMNQNMRYG TTFTTQVFPI DYTKVLEGIG
VKVVEARDRE ELRRATEEAV SWSAKMPTVL RVRVNPNSVP SRLTRR
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