| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1146 |
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| Symbol | |
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| ID | 5103494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1092307 |
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| End bp | 1093125 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640507038 |
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| Product | CRISPR-associated RAMP Csa1 family protein |
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| Protein accession | YP_001191231 |
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| Protein GI | 146303915 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4343] Uncharacterized protein conserved in archaea |
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| TIGRFAM ID | [TIGR01896] CRISPR-associated protein, Csa1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.480341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGGTCGC AGATTACGAG ACAACTCAGG CTCCTCCACT CGTATAGGGC CTCGGACCCG
ATTGAGGAGG AGCTCAGGGG TTGGAGTTAT CATCACCCTC CCATTAAGCC TAGGCGCTAC
CTCTCACTCT CGATGGGAGA CGTTGCCTAC AGGTACTGTG AGACCAAGAG GGATGTTTAC
CTTCGCAGGA ATGGGGTTCA AGGAGAGGCA AATCAGGCCT TGAATCACGG ACTTTCAGTC
CACAGAATAT TCTCGACGAT CTCTAGGGAA GTCTCTAGAC TTACCCTCTC CGGTCTACCT
CCCTGGGACG TGGTCTCCAT CCTCATGTCG AGGTGCTCCA AGCTATCAAG GGAGTGCCAG
GATAGGTCAG GTTGTGAGCA GGCGTGCAAG TCCTTCTCCC TTGACCTCAT CTCAGACTAC
TTCGACTCAA CTTCCTTCAT CCCAACGATC TCGGAGTTCA GGGTAGACGG GACTCCCCTA
GGTTTATCCC CACGCCTCTC CGTGGACGCC ATAACCCAAT TCTCGATGGT GGTTGAGATA
AAGACCGGAA CCCCTCAGGA CTTTCACAAG CTAGCACTAG CGGGATACGC CCTTGCCCTG
GAGAGCTCCC TCGAGTTACC CCTGGACTTC GGAACCCTCA TCTACGTGAG GGGTGGGGAG
TTAAGGTATG AGTCGCACTA CGTCTCGCCT GATCTCAGAA AGGAGTTCCT GGACTCAAGG
GATGAGGTGA TCAGCATGCT GTCTGAGGAT CGCGACCCAG GTTTACCCAC GGTGTGCTAT
CCAAGTTGTC CCTTCCTTTC CCACTGCAGG GGTGGTTAA
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| Protein sequence | MRSQITRQLR LLHSYRASDP IEEELRGWSY HHPPIKPRRY LSLSMGDVAY RYCETKRDVY
LRRNGVQGEA NQALNHGLSV HRIFSTISRE VSRLTLSGLP PWDVVSILMS RCSKLSRECQ
DRSGCEQACK SFSLDLISDY FDSTSFIPTI SEFRVDGTPL GLSPRLSVDA ITQFSMVVEI
KTGTPQDFHK LALAGYALAL ESSLELPLDF GTLIYVRGGE LRYESHYVSP DLRKEFLDSR
DEVISMLSED RDPGLPTVCY PSCPFLSHCR GG
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