| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1141 |
|---|
| Symbol | |
|---|
| ID | 5103489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1077940 |
|---|
| End bp | 1079418 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640507033 |
|---|
| Product | CRISPR-associated helicase Cas3 family protein protein |
|---|
| Protein accession | YP_001191226 |
|---|
| Protein GI | 146303910 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.607397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCCT TAGTTGATTA TTACGGAGAG GCTTGTAAGC TACAAGGGTT TGAGCCTAGG
AAGGGGATAG AGGAGACCCT TTCCAAGATA GAGGAGGGGA AAGCAGTCAT CCTAACTGCC
CCAACGGGTT ACGGCAAGAC CTCACTTACG TATGCCTTGG GACTGGCCAG TCTCAGGGGG
AACGGGCACT TTGATAGGGT AATACACGTC CTGCCCCTTA GAAGTATTGT CCAGGACCTT
ACCTCAAAGC TCGAGAACTT CATGAGGCTA GCGGGTTACT CCAACACAGT TGTTGGGGCC
TACGACATGG ACTTCCACGA CACTCCTTAC TTCCTGAGAA AGGTGAACGT TACGACGCTT
GACTCATTCG TATTGAACAT GTTCAAACTA CCTGTGTCCG AGATTACTAG GGGTATGAAG
GGGATGGGGA CTCACTACGA GGTTCCGAGG GGGGCGATCT ACTCCTCAGT GGTTGTGTTT
GACGAATTCC ATCTTTTCTC CGATGACGGA GGAAAGGACA AAAGCCTGAC CTCAGTGATA
GCGTCACTTA GGGGACTTGG GGCGATGCAG GTCCCCTTCG TAATCATGAC GGCAACCCTT
CCAGGTTCCC TTAGGGACTT GATCAAGGAG GAGCTTGAGG ACGTCGTTGA GGTCGTGGAG
GTCAAGGACA ATTTCAAGAT AGAGAGGGAT GTTAGCGTTG ACTTCGTGGA TGAGCTGGAC
TTCAATAAGC TTGATAGAAG GACTCTCGTG GTCATGAACA CCAGGAAGGG GGCCATCACC
GCGTACCAAG AGGCCAAGAA GGCCGGACTG TCCCCCGTTC TGATTCACTC GAAGTTCAGC
GCCATGGATA GGAGAAGGAA AGTTGACGAG ATCAAGAACG CTAAACTGGT CATCTCAACG
CAGGTGATAG AGGCCGGAAT TGACGTTTCG TTTGACGTCC TCTACACCGA GGCTGCCCCA
CTCCCCAACT TGGTCCAGAG GGCTGGCAGA GTTGCGAGGT ATGGCGGACA GGGAGAGGTT
CACATTCTTC CCTTCAGCGG TCACGTCTAC GATCGGAACG ATGTTGAGAC GAGCCTTGAA
ATTGTGAGAA GGGAGGGCAA ACTTGATTCG TCACTTATGT CGAGTTTTAA CACCAGTTAC
ATCCTGAACT CCGATCTTCT GTTCTCGTTA AATATCTTGG ATGAGGGGCC CTTCTTCTCG
TCGGAGGCAA CTGCGAAACT CCTTAAGAAG GAATGCTCGA TCACAAGGGA GACATCCCTT
ATCATGGGCT TTCCCCAAGG ATGTAGATCC TCAGCCTGCG GGATCCCGCT AACTGAGGAT
GAGGCTAAGG ACTTGTTGGA GAGAGGGGCC AAGCCACTTC GCGATGGAGA ACTAGTTGAC
TGGAAACCTG GGAACCTTTG CCTCTCAATA GATTTCATGC TGAAGGGAAT TGACGGAATC
TCTGTGGACT ACAATCAGGA GGTTGGGGCG ATACTATGA
|
|---|
| Protein sequence | MSSLVDYYGE ACKLQGFEPR KGIEETLSKI EEGKAVILTA PTGYGKTSLT YALGLASLRG
NGHFDRVIHV LPLRSIVQDL TSKLENFMRL AGYSNTVVGA YDMDFHDTPY FLRKVNVTTL
DSFVLNMFKL PVSEITRGMK GMGTHYEVPR GAIYSSVVVF DEFHLFSDDG GKDKSLTSVI
ASLRGLGAMQ VPFVIMTATL PGSLRDLIKE ELEDVVEVVE VKDNFKIERD VSVDFVDELD
FNKLDRRTLV VMNTRKGAIT AYQEAKKAGL SPVLIHSKFS AMDRRRKVDE IKNAKLVIST
QVIEAGIDVS FDVLYTEAAP LPNLVQRAGR VARYGGQGEV HILPFSGHVY DRNDVETSLE
IVRREGKLDS SLMSSFNTSY ILNSDLLFSL NILDEGPFFS SEATAKLLKK ECSITRETSL
IMGFPQGCRS SACGIPLTED EAKDLLERGA KPLRDGELVD WKPGNLCLSI DFMLKGIDGI
SVDYNQEVGA IL
|
|---|
| |