| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1114 |
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| Symbol | |
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| ID | 5103587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1040668 |
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| End bp | 1042389 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640507008 |
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| Product | succinate dehydrogenase subunit A |
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| Protein accession | YP_001191201 |
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| Protein GI | 146303885 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.358332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCTG AAGTAATTAC CACAGACCTC ATCGTGCTGG GAAGTGGACT TGCTGGCCTG
AGGTCAGCGA TAGAGTTCGA TAAGCTTTCA GGGGGGAAAT ACGAGGTTTC TGTTCTGTCC
AAGGTTCAGG TAATGAGGTC TCATTCTGTG GCTCCTGAGG GAGGAGCAGC TGCGGTCATG
CAGGTTGGAG ACTCCTTTGA GCAACACGCA TACGACACAG TTAAGGGGTC AGATTTCCTA
GCAGATCAGG ACGCCGTGGA GCAATTTGTT GTGGATGCTC CCCAGGAAAT CCTTCAGCTT
GAGCATTGGG GGATGCCCTG GGCTAGGGAC TCGGAGGGAA ACCTGCTGGC AAGGGCCTTT
GGGGCTCACG AAGTTCCGAG AACGTATTTC GCCTACGATA GAACCGGATT TTTCCTCATG
AAAACCCTTT ACGATAGGGC CCTGGGCGGG AACAACATAA AGTTCTACCA CGAGTATTTC
GCCACTGCCA TAATTCACGA CGGTTCCAGG TTCAGGGGCC TTCTCGCCAT GGATAGGGCA
ACGGGAAATT TCTACCTGTT CAAGGGTAAG GCCTTGATCA TGGCCACCGG TGGGATTGGG
AGGATATATA AATACGTGAC CTACTCCCAC ACGGTAACAG GTGACGGACT TGCCATAGCC
TATAGGGCGG GGATACCCCT CAAGGACATG GAGTTCATTC AATGGTTGCC CACTACCATG
GTTCCATACG GTATTCCAGC GACTGAGGCA TTAAGGGGAC ATGGGGCTCT CCTCCTTAAC
TCTGAGGGGG AGAGGTTCAT GAAGAAGTAT GCCCCGAGGA AGATGGAGCT TGCGGCCAGG
GACGTAGTAA CTAGGGCAAT TCTTACGGAG ATCAAGGAGG GTAAGGGCGT TGGGGGTCCC
AGGGGTATGA GGGCAGTTCT CCTCGATACT AGGCCAGTGG GAGAGGAGAG GCTCAAAACC
ATCTACAAGA CCTTCAGGGA GAACGCAATC CAGTTCCTAG GTAAGGATCC CCTAGAAGAG
CCCATCCCAG TCCTCCCTGC GGCGCATTAC TCTATGGGAG GAATTCACGT TCAGGGAACT
GAACTCTCGA CTCCACTAAA GGGAGTGTTC GCAGCAGGGG AAGTGGCCAA CGTGAGTCTT
CACGGGGCAA ATAGGCTAGG CTCTAACTCC TTACCGGCCT GTTTAGTCAT GGGGAGATGG
GCCGGGAGAA GTGCCTTCAA CTATATCTCA AAACTTGAAA ATGACGTCCT TGAGGACTTG
AACGATAAGG TGAAACTTGA AGTGGAAAGA TCCTACTCTC TCATAAAGAA GGAGAACGGA
TCCATAACTG CGTACGAGGT GAGGAACAAA CTGCAGGAGG TAATGGAGGA TGGTGTGGGA
GTGTTCAGGA ACGAGGAGGG ACTTCTGGAC GCCATAAAGA GAATAAAGGG TCTAAAGGAG
GCTTACACCG GGGTCTACGT TAGGGATAGG GCATTCGAGT ATAACCTTGA ATGGATACAT
GCTCACGAAA TCATGAATTT GCTGGATATG GCTGAGGTAA TAGCGGTATC GGCCCTGAAC
AGGAGGGAGT CAAGGGGTGC CCACTTCAGA CAGGACTTCC CTTCAAGGGA CGATCAGGGT
TTCCTGAAGC ATACCTTGGC AACCTACAGG AGCGATGGAC CGGTAATATC CTACATTCCG
GTAAACATCA CCAAGTGGAA GCCAACAGAG AGGGTGTATT AA
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| Protein sequence | MDAEVITTDL IVLGSGLAGL RSAIEFDKLS GGKYEVSVLS KVQVMRSHSV APEGGAAAVM
QVGDSFEQHA YDTVKGSDFL ADQDAVEQFV VDAPQEILQL EHWGMPWARD SEGNLLARAF
GAHEVPRTYF AYDRTGFFLM KTLYDRALGG NNIKFYHEYF ATAIIHDGSR FRGLLAMDRA
TGNFYLFKGK ALIMATGGIG RIYKYVTYSH TVTGDGLAIA YRAGIPLKDM EFIQWLPTTM
VPYGIPATEA LRGHGALLLN SEGERFMKKY APRKMELAAR DVVTRAILTE IKEGKGVGGP
RGMRAVLLDT RPVGEERLKT IYKTFRENAI QFLGKDPLEE PIPVLPAAHY SMGGIHVQGT
ELSTPLKGVF AAGEVANVSL HGANRLGSNS LPACLVMGRW AGRSAFNYIS KLENDVLEDL
NDKVKLEVER SYSLIKKENG SITAYEVRNK LQEVMEDGVG VFRNEEGLLD AIKRIKGLKE
AYTGVYVRDR AFEYNLEWIH AHEIMNLLDM AEVIAVSALN RRESRGAHFR QDFPSRDDQG
FLKHTLATYR SDGPVISYIP VNITKWKPTE RVY
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