| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1108 |
|---|
| Symbol | |
|---|
| ID | 5103582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1035797 |
|---|
| End bp | 1037266 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640507003 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001191196 |
|---|
| Protein GI | 146303880 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0811747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTAG CAGAATCAAT ATTCAAAACC CTGTCAAGTT CTACCACAAC CGTGTACGGG
AACCCAGGAA CCACGGAGAT TTCCTTTCTC AAGTATCTAC CGAGCGAATT TCGATATTTC
CTAGCCCTCC ACGATGGCCC AGCCATAGGT ATGGCCAGTG GTTACTCTCT CATGACAGGT
AAGGTAGGGG TAACCAACAC GCATGCAGCT CCTGGGTTAA TGAATTCCTT GGGTTACGTT
TATTCGGCAA GACTTGACAG AACTCCCCTT CTCATCACGG TGGGGCAACA GTCTTCTACC
CAGTTGTTGG ATGAGCCCAT ACTTTCCGTA GATCTAAGGA CCGTTCCATA TGCAAAGGAT
GTGATAGAGG TGAGAAGGAA GGAGGAAGTT AGTAAAGCCT TGATTAGGGG AATCAAAACG
GCTGTTTCTC TTCCGCCCGG ACCGGTTATC CTCGGGCTAC CATATGACAT CATGGAGGAG
GAGATAGGGA ACACGGAGAG TTACATCTCT GGAAGAGTTG AATGGAACTG TCCCTGCAAT
CTCCTAGACG TAGAGATGGT AGCCGAGGAG ATCAATGCAG TCAATAAAGT TGCAGTAGTT
GCAGGATACG AATTGGACAT AGTGGATGCT CACGAGGAAG TTGTGGAGTT GGCAAGAAAG
GTGGGTTCAC CTATCTTCAC AGAACCCCAC TTCTCCCGGT CTCCAGGTTC AAAGATCGAC
GTTATATTAC CAAGAAGTGC CAGTGGGATA AACAGGATTC TTGGTCAATA CGATCTAGTC
CTCCTCCTCG GAGGTACCCT TCACAACGTG TTGTACATGG ACCAAGAGTT CAGGTTCAAC
ATACTTCAGA TTACCATGGA CCCAGAGGAG AAATCCAAGA GGATTTGGAG AACCGTCCTC
TGTAATCCAA AGGACTTCCT GAGACACCTT CTCCCTAAGG TAAGGGAAAA AGTCGGTTCT
CACGATCTCA AGCCGGATAA CAAAAATAAG GTCACGGAGC TAATGGAGTA CCTGGTTTCA
AAGCTAAACG GACACGCCAT ATTTGAAGAG ACTCCGTCCC ATAAGGAGGT AGTTAAGAAA
GTAATTGGGA TTAGGAAACA TCTCTTCTTC TCCAATAGAT CTGGATTCCT GGGTTGGGCT
CTACCTGCAT CACTGGGCTA CGTTACTGCC GGAGGTAAGG CTGTCACTCT CATAGGAGAT
GGAAGTTTCC ACTTTTCTCC ACAGACACTT TGGACCGCAT CCTACTATGA CCTAGAAATG
AGAATAATGA TACTTAACAA CCATGGGTAT GAATCGTTGA GGGGGAGAGC TGATTATCAA
GCTAACTTCT TCAATCCAAG GACACAACCC CTAAAAGTCG CTGAGGCTTA TGGATTTGAG
ACGTTCGAGA CTGACCATTT AGCAGATGGT GTGGATTGGC TAATGGAAAA GGGAGGGAAG
AGGAGAGTTG TGGAAATTGT ACTAAAATAA
|
|---|
| Protein sequence | MNVAESIFKT LSSSTTTVYG NPGTTEISFL KYLPSEFRYF LALHDGPAIG MASGYSLMTG
KVGVTNTHAA PGLMNSLGYV YSARLDRTPL LITVGQQSST QLLDEPILSV DLRTVPYAKD
VIEVRRKEEV SKALIRGIKT AVSLPPGPVI LGLPYDIMEE EIGNTESYIS GRVEWNCPCN
LLDVEMVAEE INAVNKVAVV AGYELDIVDA HEEVVELARK VGSPIFTEPH FSRSPGSKID
VILPRSASGI NRILGQYDLV LLLGGTLHNV LYMDQEFRFN ILQITMDPEE KSKRIWRTVL
CNPKDFLRHL LPKVREKVGS HDLKPDNKNK VTELMEYLVS KLNGHAIFEE TPSHKEVVKK
VIGIRKHLFF SNRSGFLGWA LPASLGYVTA GGKAVTLIGD GSFHFSPQTL WTASYYDLEM
RIMILNNHGY ESLRGRADYQ ANFFNPRTQP LKVAEAYGFE TFETDHLADG VDWLMEKGGK
RRVVEIVLK
|
|---|
| |