| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1088 |
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| Symbol | |
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| ID | 5103562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1015000 |
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| End bp | 1015605 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640506983 |
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| Product | haloacid dehalogenase, type II |
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| Protein accession | YP_001191176 |
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| Protein GI | 146303860 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATACTTC TAACCATGAG ACTTATACTT GCCTTCGACG TCTTCGGAAC TCTTCTAGAT
ACCTCCAGCT TTCCACAAGA GATAAGGAGG AAACAGCTGG AACTTACGTG GGTTTACACT
GTCATGGAAA AGTTTGTTCC CTTCAGGGAG ATCACCAGGC AGGCCATAAG AGACTACCTT
CTCGTGAACG AGGGGAAGGA GGAAGAGTTG ATGAACTCGT GGTTGAACCT GAAGGCGTAT
CCCGACGTGA AGTTCTTGGG GGACATATCA GCACTAGCTG ACGTCTTTGC CCTAAGTAAC
GGATCCGTCG AGGAAGTGAA GGACCACCTG AGGAGAAACG GGATCCTAGG GTTCTTCAAG
GGGATAGTGA GCGCCGAGGA AGTGAGGGCA TACAAGCCCT CGCCTAGGGT CTATAAACAC
TTCATGGAGA GCGTGGGTTA CCCGGCGTTC CTGGTATCCT CGAACTGGTT TGATCTCATG
GGGGCTAGAA ATGCGGGAAT GGGTACCATA TACCTTAACA GGAGAATGGA GAAGCTCGCC
CTAGAAGTTG ATGTAATTGC AAGGGATCTG GAGAAACTCG CGCAATACCT GAGAGAGAAG
GCTTGA
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| Protein sequence | MILLTMRLIL AFDVFGTLLD TSSFPQEIRR KQLELTWVYT VMEKFVPFRE ITRQAIRDYL
LVNEGKEEEL MNSWLNLKAY PDVKFLGDIS ALADVFALSN GSVEEVKDHL RRNGILGFFK
GIVSAEEVRA YKPSPRVYKH FMESVGYPAF LVSSNWFDLM GARNAGMGTI YLNRRMEKLA
LEVDVIARDL EKLAQYLREK A
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