Gene Msed_1017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1017 
Symbol 
ID5104320 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp938769 
End bp939185 
Gene Length417 bp 
Protein Length138 aa 
Translation table11 
GC content51% 
IMG OID640506916 
ProductUspA domain-containing protein 
Protein accessionYP_001191109 
Protein GI146303793 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0550941 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTATAAAA AGCTTCTAGT TGGATATGAT GGATCGGAGC AAGCCAGGAA GGCGTTGCTC 
CACGCTATCC AACTGGCTAA GCTTCACTCC TCAAAGGTGG TTGCGGTCGA GGCAATAGAC
TCTGATCACT TCGTGATCGA GGGCTATTAC AGGGAGGATC ACGTCAAGAT TAAGGAGAGG
ATAATGGCCC ACACCGAGGA CATCAAGAGG ATATCTCACG AGCATGGAAT TGACGTGGAG
TTCAAGGTGG CTAGGGGTCC ACCTGATCAG GTGATCTCGA AGTTCGCTGA GGAGGAAGAC
GTTGACCTGA TAGTGTTAGG CACCAGGGGA TTTAAGGGAC TTAAGAAGGT TTTTCTCGGG
AGCGTTAGCT CGTCGGTTGC CGAGAGGACC AAGAGGCCGG TCCTAGTCGT GAAGTGA
 
Protein sequence
MYKKLLVGYD GSEQARKALL HAIQLAKLHS SKVVAVEAID SDHFVIEGYY REDHVKIKER 
IMAHTEDIKR ISHEHGIDVE FKVARGPPDQ VISKFAEEED VDLIVLGTRG FKGLKKVFLG
SVSSSVAERT KRPVLVVK