| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1004 |
|---|
| Symbol | |
|---|
| ID | 5105603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 924826 |
|---|
| End bp | 925434 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640506903 |
|---|
| Product | isoprenylcysteine carboxyl methyltransferase |
|---|
| Protein accession | YP_001191096 |
|---|
| Protein GI | 146303780 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2020] Putative protein-S-isoprenylcysteine methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00191791 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0260384 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAACA ATTTTGCCGA GACCGTTGAA ATTGTTTTTG CGTTGTCATA TGGAACCCTT
TCAGTAGAGT TATTACTTAC ATATCTTCTC CCTAGAGTTT GGAAAAGAGG TGAGCAAAGA
GGGAAAATAA GAAGGAGAGA GTTCGGATCC TATATTGTTC TGATAGTTAC TCTTTTCGGA
ATATACTTCG TGGATATTTT CTTTACATAT TTCTCGTTTT ACTCTGGATT AGGCGAGTTA
CCATTTCTCT TGGTATATTT GGGAGTTATT TTAGCGCTAG TAGGGATAGG GTTTAGGTTA
TGGGCAATCT TGACCTTAGG AAAATTCTTC TCTCCCGTAG TGACTTTGCT AGAAAATCAC
CGGGTTGTTG ACTCCGGCCC TTACGCATAT GTTCGGCATC CAGCATACGG TGGGGCCATT
ATCATACTGA CCGGAGTGGC AATCGCCTCA AGGTCCATCT TCGCAATAGT TCTTTCCATA
ACAGCGTCTC TCCTGGTGTA CAGTCGTAGA GCAAAGTTGG AGGAAAAGCT CTTGACTCAA
GAACTGGGAG AGGAGTATAT TTCTTACATG AACCGCGTCA AGAAGAGGTT TATCCCCGGT
ATAGTGTAG
|
|---|
| Protein sequence | MINNFAETVE IVFALSYGTL SVELLLTYLL PRVWKRGEQR GKIRRREFGS YIVLIVTLFG
IYFVDIFFTY FSFYSGLGEL PFLLVYLGVI LALVGIGFRL WAILTLGKFF SPVVTLLENH
RVVDSGPYAY VRHPAYGGAI IILTGVAIAS RSIFAIVLSI TASLLVYSRR AKLEEKLLTQ
ELGEEYISYM NRVKKRFIPG IV
|
|---|
| |