| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0989 |
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| Symbol | |
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| ID | 5104538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 911864 |
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| End bp | 913615 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640506888 |
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| Product | glycoside hydrolase 15-related |
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| Protein accession | YP_001191081 |
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| Protein GI | 146303765 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.422576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0726488 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTCTGCC TCAACAACGA ATTCACAGGG GCCCTTATAA CTGGAACTGA GGTCGTATGG
TTGACCTTTC CCAGATACGA TTCCTCCCCT GTCTTCGCGA AGATTCTCGA CGAGAAGGCT
GGTTCCTTCG GTATATCAGG GGAAGTGGCA ACTCAGGAGT ACCTAGTTCC TAACATATTG
AAAACTGTTC TGAGGGACGG AACAGAGGTG ATTGACCTCC TCCTAAGGGG AGAGCACTCT
CTAGTTAGGA AAATCAATGC AAGGACTCCC CTGGAGATCT GGGCTGATGC AACGTTCAAC
TACGGGAAAG TAAGGGCTAA GGTTTACAGG TTAAGTAAGG GAATTTACAA GTTAGCTAAC
CCTGAGAACT CGGAATTCCT GGAACTACAT CTCATCTTTC CCTCAATTCA AGAAACTAGC
AGGGGGTGGG TGGTATCAGG AGAAGGATAT GCCTTCCTTG GTCATTTCAG TGATGAGAGG
TTCGGCATAT TTGGGAAGGA GCTCAAATTC GATGTGGAGA CTGGGGTAGA GAGGACCATA
AATTACTGGA GAAACCTGAT TAGGAGGGGG AAGGGAAGGG GTAGGATCTC TCGTATGGAG
ATACCGGGAT TTAAGGGAGA GGACCTTCTA ACGGCCTATG AAACGTCTGT AGGTATGCTT
TTGGGATTAA TGTATAACCC CACGGGGGCA ATAGTTGCTG CACCCACAAC TTCGCTTCCT
GAGATAGAGG GCGGTGTGAG GAACTGGGAC TACCGCTTCG CCTGGGTTAG GGACTCCTCG
ATTGTGGCTG AGGGTCTCAT CTCTGCTGGG CACACAATGG ACGCCAGGAG AATCATAGAG
TTCCTATCTA GGATGGTGTC GTTCACGACG AAGCCGTTCC TCTACCCACT CTATTCCATA
GACGGTTCGG TTCCCCCAAG GGAGGTGGAG ATCCCCTGGC TCTCTGGTTT CATGAACTCC
AGGCCCGTGA GGGTCGGAAA CGCGGCGGCA GCTCAGCTTC AGCTAGATCT AGAGGGATTT
TTCATGGATG CACTTTACAA GTACTACGTG GCCACGGGGG ACTCCTCCTA CGTGAGGGGA
CATCTGGACG TAATAGAGTA CATTGCTGAT TGGGTATCTG AGAACTGGAA GCTTCAGGAC
GTAGGAATAT GGGAGGAGAG GGGAGTTCAG GCGCACTATA CCCACTCAAA GGTTATGATG
TGGGTAGCTC TGGAGAGGGC AGGAAAGCTA GTGAAGGTGG TGGATAAGGA GAACAGATGG
AAAGATACTA GACATGAGAT CAGGGAGTGG ATAACGGAGA ACTGCGTAAA TGATGGGAAG
TTCGTAAAGA GGCCTGGAAG CAATGAGGTC GACTCCGCAT TACTTACCCT ACCGCTTTAC
GGATTTGTTG AACCAGACGA TCCAACCTTT CTGAACACCT TAAGGGAGAT AGAGAACACC
CTGGTAGTTG ACGGCCAGGC CAAAAGGTAT AGGAGGGACT TTCTGGGGGA GGCAAAGTAC
CCCTTCACGC TGGCTAGCCT TTGGTTAGCT AGGGTTTACA TAAAGCTGGT GAGGATTGAG
GACGCTGAGA GGATCATATT GGGTATCCTA GAGGCCACTC GCGGTACATA CCTCGTGGGA
GAGCACATAG ATCCTAAGAG GAAAGTGTTC ACGGGGAATT TCCCGCAGGC CTTTGCCCAA
TCTAACTTGA TACTGGCACT CAATGAACTT GCTGAAGCCA AGTCAGTTGC TCCTGACGAG
GAAGGTCAAT GA
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| Protein sequence | MFCLNNEFTG ALITGTEVVW LTFPRYDSSP VFAKILDEKA GSFGISGEVA TQEYLVPNIL
KTVLRDGTEV IDLLLRGEHS LVRKINARTP LEIWADATFN YGKVRAKVYR LSKGIYKLAN
PENSEFLELH LIFPSIQETS RGWVVSGEGY AFLGHFSDER FGIFGKELKF DVETGVERTI
NYWRNLIRRG KGRGRISRME IPGFKGEDLL TAYETSVGML LGLMYNPTGA IVAAPTTSLP
EIEGGVRNWD YRFAWVRDSS IVAEGLISAG HTMDARRIIE FLSRMVSFTT KPFLYPLYSI
DGSVPPREVE IPWLSGFMNS RPVRVGNAAA AQLQLDLEGF FMDALYKYYV ATGDSSYVRG
HLDVIEYIAD WVSENWKLQD VGIWEERGVQ AHYTHSKVMM WVALERAGKL VKVVDKENRW
KDTRHEIREW ITENCVNDGK FVKRPGSNEV DSALLTLPLY GFVEPDDPTF LNTLREIENT
LVVDGQAKRY RRDFLGEAKY PFTLASLWLA RVYIKLVRIE DAERIILGIL EATRGTYLVG
EHIDPKRKVF TGNFPQAFAQ SNLILALNEL AEAKSVAPDE EGQ
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