| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0952 |
|---|
| Symbol | |
|---|
| ID | 5104268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 879436 |
|---|
| End bp | 879969 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640506854 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001191047 |
|---|
| Protein GI | 146303731 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0012758 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGGA TGAGGGAGGA GAGGGAGGAG GAGTTCAGGG AGAAGAGCAA GAAATTTTGG
GAGGAGATCC GGAAGATGAG GGAAGAGAGC GAGAAGAGGA ATGAGGAGTT CAAGAGGAGA
TTTGAGGCTG TGCAGGCTGA GATTAGGAGC GTAATCATGA AATATTCCAT GAGCCTAGAA
GAGGAGGCTA AAACAGCACT GGAGTGGAAG CTCAAGAACC TTGGTTACAC GGTAAAGGTT
GAGGAACTCG AGATTCCCTC CCTGGCTAAG GCTGATCTAT TTGCCGTATT CGACAATTAC
GTTCTCATAG GGGAGGTAAA GATTAAGGCA GAACCTAGCG CTATACGGCA GTTGGAGAGT
ACGATAGAGT CAATCAGGAG AAATAGGCCA GAGCTACTTG AGGGCAAAAA GATAATCCCA
GTGATATTCT CCATGAGACC TAAGTACATT CAGAGGGAAT GTGAAGAGAA GGGAATATTT
CTAACTGACG GATATAACGA CTACACAGAT CTCAAGAAGA TTATGATGAA GTGA
|
|---|
| Protein sequence | MNGMREEREE EFREKSKKFW EEIRKMREES EKRNEEFKRR FEAVQAEIRS VIMKYSMSLE
EEAKTALEWK LKNLGYTVKV EELEIPSLAK ADLFAVFDNY VLIGEVKIKA EPSAIRQLES
TIESIRRNRP ELLEGKKIIP VIFSMRPKYI QRECEEKGIF LTDGYNDYTD LKKIMMK
|
|---|
| |