| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0933 |
|---|
| Symbol | |
|---|
| ID | 5104363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 859929 |
|---|
| End bp | 860987 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506836 |
|---|
| Product | hydrogenase expression/formation protein HypE |
|---|
| Protein accession | YP_001191029 |
|---|
| Protein GI | 146303713 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0309] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR02124] hydrogenase expression/formation protein HypE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.900318 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGC CCGATAGAAA GAACGTAATT ACCCTACTCC ACGGGGCTGG AGGGACGTAC
ATGCATTCCC TGATAAGGGA CGTCTTTTTG AAGCTAAATG ATGGATTTGG CGAGGTGGGA
CTAGAAATGA TGGACGATGC AGCCGTGGTT AATGGAATAG TGTTCACTAC GGATTCGTTC
GTCATTAGGC CCATTTTCTT CAGAGGTGGA GATATAGGAA GATTAAGCGT GAGTGGCACA
GTAAATGATA TAGCGATGAT GGGGGGAGAT CCTCAGGCCC TGAGTCTTGG AGTAGTATTA
GAGGAAGGAT TCCCCAAGGA TATGTTGGAG AAGATAGTTG AAAGCATTAA GAAGACTGCT
GAGGAAGCGA ACGTCCACGT AGTTACTGGA GACACGAAGG TCATGGAGAG GGGAAACTTA
GATAAAATTG TCATTAACAC CGCCGGAATA GGTACAAGAC CTAGGCAATT GGATCACAAC
ATTGAGACCT TGAGGAAAAG TAGGCAACCT TCCCGCTGGT TAGTTCCCAC TAACCTTAGG
GATGGAGATA AAATTGTGGT CACCGGTACC CTTGGGGATC ATGCCATAGC GGTCCTATCT
TCAAGGGAAG GAGTGGGATT TGAGTCAAAT GTCATGTCCG ATGTTGCCCC TCTCAATAAG
ATGATCATGA ACCTACTGGA AGTAGGAGGA ATAGCTGATG CCAAGGATCC AACGAGAGGA
GGACTGGCAG ATCTGCTTCA GGACTGGTCG GAAAAGTCTG GACTTGGAAT CTTCATAAGG
GAGAGTGACA TCCCAGTGAA GGATGAGGTC AGAGCTGCCG TCGAGTTTCT AGGAATGGAC
GTTCTAGAGT TGGGTAATGA GGGAAAGGCC GTCTTAGCAG TTTCGCCTGA ATATGTTAAG
GACGTTATGG ACGCGTTACA TTCAGATCCG CTTGGGAAGG ACGCAACAAT AATAGGAGAG
GTCAGAAAGG ATTTAGAGGG GGTAATAATG GAGACTGTGG TCGGGGGAAA CAGGTATGTT
GGAAGACCCT TAGGGGATCC AGTTCCTAGA ATATGCTAG
|
|---|
| Protein sequence | MELPDRKNVI TLLHGAGGTY MHSLIRDVFL KLNDGFGEVG LEMMDDAAVV NGIVFTTDSF
VIRPIFFRGG DIGRLSVSGT VNDIAMMGGD PQALSLGVVL EEGFPKDMLE KIVESIKKTA
EEANVHVVTG DTKVMERGNL DKIVINTAGI GTRPRQLDHN IETLRKSRQP SRWLVPTNLR
DGDKIVVTGT LGDHAIAVLS SREGVGFESN VMSDVAPLNK MIMNLLEVGG IADAKDPTRG
GLADLLQDWS EKSGLGIFIR ESDIPVKDEV RAAVEFLGMD VLELGNEGKA VLAVSPEYVK
DVMDALHSDP LGKDATIIGE VRKDLEGVIM ETVVGGNRYV GRPLGDPVPR IC
|
|---|
| |