| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0906 |
|---|
| Symbol | |
|---|
| ID | 5103552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 837089 |
|---|
| End bp | 838396 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506809 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_001191002 |
|---|
| Protein GI | 146303686 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.598412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTAT ATATGACACA AATCCTCGAG GCGAGAAGGG GAAATGTCAC CGAGGAGATG
AGGAAGATCG CTGAAATCGA GGGAGTATCT CCGGAAAAGA TTAGGGATAG GGTCGCTACA
GGCAGAGTAG TAATTCTCAA GAACTTGAAA AGAAACTTGA GGAAGTACAC CGCAGTAGGG
GAGGGGCTCT CAACGAAGGT GAACGTTAAT ATTGGTGCCT CGACTGATCA TTACAATATA
GAAGAGGAAC TGAGGAAGGT GGAGATAGCG AATAGATACG GAGCGGATTC CCTAATGGAC
CTAACCGATG GCGGTGACAT AGATTCCATG AGGAGGATGG TAATAGAACA CGCAGAAATG
CCCGTGGGGA CGGTCCCCAT TTATCAGGTA TATTATGAGA TGGTCACAAG AAGGAAGTAC
GTAATCGACT TCACGCCTGA TGAACTTTTC AGGGTGATAA GGAAACAGTT AGATGACGGA
GTTGACTTCA TCACTGTTCA CACTGGAATT ACCCTCGAGC TCTCCAGAAA ACTAGTTGAG
AAGAAAAGAG TGGCAGGTAT CGTGAGCAGG GGTGGAACTA TCATGGCTGC ATGGTCCCTA
CATAATCAAA GGGAGAACCC GCTTTATTCA GAGTTCGATT ATCTCCTGGA AATAGCAAGG
GAATATGATG TTACCCTGAG CCTTGGAGAT GCGCTCAGAC CTGGAGGAAT TGCTGATGCG
CATGACGAGT TCCAGGTAGC TGAGCTCATA AATAACGCTA GGTTGGCCAG GAGGGCGGTC
GAAAAGGGAG TCCAGGTAAT GATAGAGGGA CCTGGTCACA TGCCCTTAGA TCAGATAGAG
ATGGACATAA AACTTGAGAA GGAACTCTCT GGAGGAGTTC CATATTACGT CCTAGGAATT
TTACCTACCG ATATAGCTGC AGGCTATGAT CACATTGCCG GAGCCATAGG AGGTGCAGTC
GCCTCAGCTC ACGGAGCTGA TATGTTATGT TATCTTACAC CTGCAGAACA TCTTTCCTTG
CCTACCCCAG AACAAGTGAA GGAGGGACTC ATAGCATTTA AGATAGCTGC CCATGTGGGG
GATACGATTA AACTCGGGGA GAGGGCTAGG GAAAAGGACA GAGAAATGAG CGTGGCTAGG
GCCTCTCTCA ATTGGTTGAA GATGTTCTCG CTCACCTTCG ATCAGGATAG GGCGAAACAG
ATCTACACTC AATACAAAGA CAAGCCTCTC GGTTCATGCA CCATGTGTGG AGACCTTTGC
GTCTACCTGG TACTACCCAG AGTTACCGAG AAAATGAAGA GAACTTGA
|
|---|
| Protein sequence | MLLYMTQILE ARRGNVTEEM RKIAEIEGVS PEKIRDRVAT GRVVILKNLK RNLRKYTAVG
EGLSTKVNVN IGASTDHYNI EEELRKVEIA NRYGADSLMD LTDGGDIDSM RRMVIEHAEM
PVGTVPIYQV YYEMVTRRKY VIDFTPDELF RVIRKQLDDG VDFITVHTGI TLELSRKLVE
KKRVAGIVSR GGTIMAAWSL HNQRENPLYS EFDYLLEIAR EYDVTLSLGD ALRPGGIADA
HDEFQVAELI NNARLARRAV EKGVQVMIEG PGHMPLDQIE MDIKLEKELS GGVPYYVLGI
LPTDIAAGYD HIAGAIGGAV ASAHGADMLC YLTPAEHLSL PTPEQVKEGL IAFKIAAHVG
DTIKLGERAR EKDREMSVAR ASLNWLKMFS LTFDQDRAKQ IYTQYKDKPL GSCTMCGDLC
VYLVLPRVTE KMKRT
|
|---|
| |