| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0747 |
|---|
| Symbol | |
|---|
| ID | 5103785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 680059 |
|---|
| End bp | 680688 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506651 |
|---|
| Product | ribosome biogenesis protein |
|---|
| Protein accession | YP_001190846 |
|---|
| Protein GI | 146303530 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1756] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0675798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0968898 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATTA TTCTCTTGGA GTCCTCACTC GAACTTGTAC CGCCTGAGAT TAGGGATCAT
CCCAGTGTTG TTAAGAACGC TGAGAGACAG GGAAAGGATC CATCTCACGT TCTCCTTGAT
GTTTCGCTTC ACTATCACGC CATGCGGAAT TTGCCCCACA AGGAGAAGAG AGGAAGGCCA
GACATAGTTC ATACAGCACT ACTAGTTACG CTGACTGACC CTGACTTTAG GGGTAACCTT
TACATTCATA CCCTCGATTC CAAGGTGATC AGGGTGTCCA GGGAGATGAG ACCTCCAAAG
AACTACTCTC GTTTCGTCGG ATTGATGGAA CAGCTCCTAG TTTATGGCAA AGTTCCACTG
AAGGATGAAC CACTCATGGA AATCACCTCC CTTTCCCTTA GTGACCTCGT CCGTGATAGG
GGTTTGATTC TCCTGGACGA ACGAGGGACA AGGGTAGCGA GAACCGCACT TTGTGACCGT
AACGAGTTCA TAGGGATTGG AGCTTTTCCC CATGGAGATT TTAGCATAGA AACCAAGACG
TTATCCAAGG GAAGCTTCTC CATTAGCCAG AACGTGTTGG AAACTCAGAA CGTTCTCTGC
AGATTAATTT CAGCCTGCAT TCATGATTGA
|
|---|
| Protein sequence | MDIILLESSL ELVPPEIRDH PSVVKNAERQ GKDPSHVLLD VSLHYHAMRN LPHKEKRGRP
DIVHTALLVT LTDPDFRGNL YIHTLDSKVI RVSREMRPPK NYSRFVGLME QLLVYGKVPL
KDEPLMEITS LSLSDLVRDR GLILLDERGT RVARTALCDR NEFIGIGAFP HGDFSIETKT
LSKGSFSISQ NVLETQNVLC RLISACIHD
|
|---|
| |