| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0678 |
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| Symbol | |
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| ID | 5105284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 621079 |
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| End bp | 621870 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640506582 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001190777 |
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| Protein GI | 146303461 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000169534 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000480056 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGTACTAG ATTATGATCT AATAATAAGC GACGTTGATG GCGTTATCCT CATGGAAGGT
GATCCCATCT GGGACAACAT AAATTCGCTC AGGCAAATGA TTGAACATGG AAAGAAAGTT
ATCCTAGTGA CCAACAACTC TGGGTTCAGC AGAGTTCTTC TCTCAAGGCA ACTCAACTAC
CTAGGGTTAC CAATAGAGCC TAAGGATATA ATTACCAGCG GATTAGCTGC AGTACTTTAC
ATGAAAAAGA GTTGGGACGT GAAGAAGGTT TTCGTTATTG GCGAGGAAGG TCTTGTGGAG
GAGATTAGAA ATGCAGGATA CGAGGTATTG ATGACAGCTA ACGCTGAGAA AGAGATCCCA
GATGTGGTTG TGCTTGGACT GGATAGGCTA GTTACCTATG ATAAGCTATC CATAGGGATG
AGATGTATAT GGAAGGGTAG CAAGTTTGTC GTGACTAACA TGGATAGGTT GTGGCCCGCC
AAGGATGGTT TGAGACTAGG AGCTGGCGCC TTGGCGAGTG CCTTGATATA TGCCTTAAAG
AGGGAACCGG ATTTCGTGGC AGGGAAGCCC AACAAGTGGA TAGTTGAGGT AGCAATGGAG
CTCACGGGGA TAAGCGACTT GAAGAAGGTT CTCGTTATTG GTGACCAACT GGAGACCGAC
ATAAAGATGG GGAACGAACT AGGAGCAGAC ACTGCTCTAG TTCTTACGGG CATTTCTCAG
AGGGCAGACG TGGAAAGGAC GGGGATACGC CCTACATTTG TAATTAAGAA CCTATCTGAA
CTACTCTCTT AA
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| Protein sequence | MVLDYDLIIS DVDGVILMEG DPIWDNINSL RQMIEHGKKV ILVTNNSGFS RVLLSRQLNY
LGLPIEPKDI ITSGLAAVLY MKKSWDVKKV FVIGEEGLVE EIRNAGYEVL MTANAEKEIP
DVVVLGLDRL VTYDKLSIGM RCIWKGSKFV VTNMDRLWPA KDGLRLGAGA LASALIYALK
REPDFVAGKP NKWIVEVAME LTGISDLKKV LVIGDQLETD IKMGNELGAD TALVLTGISQ
RADVERTGIR PTFVIKNLSE LLS
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