| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0676 |
|---|
| Symbol | |
|---|
| ID | 5105282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 618381 |
|---|
| End bp | 619340 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640506580 |
|---|
| Product | succinate dehydrogenase iron-sulfur subunit |
|---|
| Protein accession | YP_001190775 |
|---|
| Protein GI | 146303459 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
|---|
| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0212132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00094044 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGCC AACTGGAGCA ACGGGAGATT GTGGTCAAAG TAAAAAGATA TAACCAGGAG
AAAGGCGAGT ACTGGCAGGA GTACAAACTA GTTGTTGATA GATTCACCCA GATGACTGAG
GTCCTTAGGA GAATAAAGTC AGAACAGGAC CCAACCCTGG CCTATAGGGC TTCCTGTCAC
ATGGCGGTCT GCGGAAGTTG TGCCATGAGG ATTAACGGGG AACCCAGGCT AGCCTGTAAG
ACCCTTGCCC TGGACATTGT GAAGAAGTAT GACAGCAACC AAATAACCGT CGAACCTATG
GATTACTTCA AGGTTCAGAA GGACCTCATC GTAGATATGG ATGAATTCTA CGCCAGGATG
TTTAAGGTTA AACCTAGGCT TTACCCAAGC AAGGAAGTGG TGGAGGGGCG TGGAGAGCAC
AGGTTAAGGC CAGAGGATCA AAGGGAACTC TGGAAGTTCG CCCAATGTAT CTGGTGTGGG
CTTTGTGTCT CAGCTTGCCC AGCTGTGAGG ATAGACGAGG AGTTCCTAGG ACCAGCAGCA
CACGCCAAGG GGTATAGATT CCTGGCGGAC CCAAGGGATA CCATCTACGA TGAAAGGTTG
AAGATCTTAG CCGATAGCGC GTGGAGGTGC ACGTATTGTT ATCAGTGCTT CAACGTATGT
CCAAGGGATG TGGAACCTGT TACCACAATT AAGAAAACTA GGGCTCACAC ACGTTTCCTC
AAGGACAAGT CAGAGGTAGC AAAGACCGGC GAGAAGCACG TTAAGGCCAT ATTTGATAGT
ATAAGGGAAA CGGGTAAACT TGAGGAGGCC AAGGTATACA TCACGACCTA CGGCCTAGCC
GCGGCAATCA CTGACATGCT TTACACCATG AGGAACGGGA AGGTTAACCT TGCATTAATT
AGGGAAAAGA AGGTAAGTCA GATAGATCAA ATTCAGAAGT TAATGGGTGA GAAGGAATGA
|
|---|
| Protein sequence | MESQLEQREI VVKVKRYNQE KGEYWQEYKL VVDRFTQMTE VLRRIKSEQD PTLAYRASCH
MAVCGSCAMR INGEPRLACK TLALDIVKKY DSNQITVEPM DYFKVQKDLI VDMDEFYARM
FKVKPRLYPS KEVVEGRGEH RLRPEDQREL WKFAQCIWCG LCVSACPAVR IDEEFLGPAA
HAKGYRFLAD PRDTIYDERL KILADSAWRC TYCYQCFNVC PRDVEPVTTI KKTRAHTRFL
KDKSEVAKTG EKHVKAIFDS IRETGKLEEA KVYITTYGLA AAITDMLYTM RNGKVNLALI
REKKVSQIDQ IQKLMGEKE
|
|---|
| |