| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0664 |
|---|
| Symbol | |
|---|
| ID | 5103824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 607828 |
|---|
| End bp | 608739 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506568 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001190763 |
|---|
| Protein GI | 146303447 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4034] Uncharacterized protein conserved in archaea |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0181311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00974404 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAC TAGTTCTGGG AGCAGGCGGA GGTGGAGATG TAGTATCTGC ACTTCTCCCT
TACGAGAGGA TCAGAAGAAG AGGTGAGAGA GTAACTCTGG GAGCTGTGCT ATGGGAGAGA
AGAGTGGAGG ATCCAGTTCC GGGCCCCATC TGCACTAACG ATCTCAGAGA AGCACAGGTA
ATAAACGAGA GAGTGGCGAT CCTTGGGCCA AACTCCTTCG CTGTAAGGGG AGGAAGGAAA
GTGAAACCGC AGGCTGCAAG AGTAGCGCAA GTATTGGGGA TTAATGTTGT TTCATTCTGT
ATATCTGGAG GTGTTAGTGG TCTATACAGG GATATCATGG AGATAGCCAA TATGCTAGGG
ATCGATCAGG TCATAGGGGT GGACGCTGGA GGTGATATTC TTGCGGAGGG AACAGAAAAT
AATCTCCTAA GTCCTCTTGC AGATTCCATT ACCCTTGCCT TGCTATCCAA GTTAGAGGAA
AGTTCCATGA ACGTACAACT ATCGGTAATC GGTTTAGGTG CTGATGGGGA ATTGAAGCCG
GATTACCTTT TACAGAGGAT AAGCAAAATA GCATCACTGA ACGGATTAAT AGAAATCCTT
GGATTTGATG AAAGTTCTGC CTCTGTAATA GAGAGGGTAC TAGAAGTTAC CGTTACAGAG
GCCTCGGCCC TGCCCTTGAA GGCCTTCAGA GGGCTTTATG GTGAGGTTCC GATCAGAAAC
GGTAAGCGTA GGGTATTCGT AAGCCCGCTC ACATCGGTCA TGTTCAGCTT CAAGCCCATA
GTTGTAGCAT CAATCTCTAA ACTGTATGAG GCTGTGAGAG ATTCCTCTTC CCTTGAGGAA
GCCAACGAGG CACTTCACAG GTTAGGTTTA ATCACAGAGC TAGATAGAGA AAGAGGCCTC
AAGGACGAAT AA
|
|---|
| Protein sequence | MNSLVLGAGG GGDVVSALLP YERIRRRGER VTLGAVLWER RVEDPVPGPI CTNDLREAQV
INERVAILGP NSFAVRGGRK VKPQAARVAQ VLGINVVSFC ISGGVSGLYR DIMEIANMLG
IDQVIGVDAG GDILAEGTEN NLLSPLADSI TLALLSKLEE SSMNVQLSVI GLGADGELKP
DYLLQRISKI ASLNGLIEIL GFDESSASVI ERVLEVTVTE ASALPLKAFR GLYGEVPIRN
GKRRVFVSPL TSVMFSFKPI VVASISKLYE AVRDSSSLEE ANEALHRLGL ITELDRERGL
KDE
|
|---|
| |