| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0635 |
|---|
| Symbol | |
|---|
| ID | 5103795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 581437 |
|---|
| End bp | 582987 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640506539 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001190734 |
|---|
| Protein GI | 146303418 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.470789 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACGACG TGGCCATTGT GGGTGGTGGT CACAACGGTC TTGTTACGGC GTCTTATCTA
GCTATGAATG GACTTAAGGT CGCCGTCTTT GAAAGGAGGA ACATAGTGGG AGGCGCCTCC
GTCACGGAGG AGTTGTGGCC AGGGGTAAAG GTTTCCACAG GCGCCTACGT TCTCAGCCTT
CTGAGACCCA GGATCATAAG GGATCTGAGA CTGGAGCAAT TTGGACTCGA GGTAATAACC
AAGGATCCCG GGCTCTTCGT CCCCTTCGGT AACGGGAGGT CACTTTACAT CTGGAGCGAT
CTCAAGAAGA CTCAGAGGGA AATAGAGAAA TTTTCCAAAA GGGACGCCTT GGCGTACGAG
AAGTGGCTCA AGTTCTGGGA TCCCTTCTAT GAATTGGCGG ATCTCCTGAT GTTGTCCCCT
CCACCCTCCT GGGATGATTT GGATAGTCTC CTCTCCCTAG TCAAGGTTCA GGGTCTAGAT
CTCTCGGAAC TGGCCCTTCC CTTGAGGTCA GTGGTTCAGG ATGCGTCCTC CCTTCTGAAC
GAGTTCTTTG AATCCGAGGA GGTCAAGGCA GCCCTAGTTG AGGACGCAGT AGTGGGGACA
ATGGCCTCTC CCTCCACCCC TGGTACCGCG TACGTTCTGG CTCATCACGT CCTCGGGGAA
GTTAACGGTG TTAAGGGTGC GTGGGGCTAC GTCAAGGGTG GGATGGGCGG TGTCACCCAA
GCTCTCAGGA GGTCGGCTGA GCACCTTGGG GTGGAAATAT TCACTGGGGC CGAGGTTGAC
AGCATTTTAG CGAAGGGAGG GAAAGTGGAA GGCATTAAAC TAGCCAACGG GAAAATCGTT
CACTCTAGGA TAGTTGTGTC CAACGCAGAC CCTAAAACCA CCTTCCTGAA GCTCCTTAGG
GACGCTGAAC TGGACGAGGA CTTCCTCAGG AGGGTCAGGT CGCTGAAGAG CAGGGGAGTC
TCATTCAAGA TCGTGGGTTA CACCGAGGAA CTGCCCAATT TCGGGAACGG GACTACTCTA
GGCCCAGAGC ACGTGGCGTC TGAGCTTATT CTGCCCTCCG TCGACTACGT TGAGAGGGCC
TTCATTGACG CCAAATCCCT TGGTTACTCC AAGGAACCTT GGCTTTCCAT AAACATACAG
TCCTCAGTGG ATCCCACGGT TGCCCCTCCG GGTAAGTTCT CCTTCTCAAT CTTCGGTCAG
TATCTTCCCT ACTCCAAGAA CTTGGACGAT ATGAGGGAAC TGGTATATCA GATAACCCTG
GAGAAAATAA GGGAGTACGC TCCCAATTTC AAGCCAGTTA AGTACGAAGT CTTAACCCCA
CTGGATATAG AGAGAAGGTT TGGAATAACT GAGGGCAACA TCTTTCACCT GGACATGACG
CCCGATCAGT TATACGTTTT CAGACCTCTG CCTGGGTACC ACGATTACAC CACACCGGTA
CAGGGGCTAT ATCTATGTGG CTCGGGAACA CATCCTGGTG GAGGGGTAAC TGGGGCTCCA
GGTTTTAACG CCGCTCAAAG GATATTGTCC GACCTCAGGA GTAATCACTA A
|
|---|
| Protein sequence | MYDVAIVGGG HNGLVTASYL AMNGLKVAVF ERRNIVGGAS VTEELWPGVK VSTGAYVLSL
LRPRIIRDLR LEQFGLEVIT KDPGLFVPFG NGRSLYIWSD LKKTQREIEK FSKRDALAYE
KWLKFWDPFY ELADLLMLSP PPSWDDLDSL LSLVKVQGLD LSELALPLRS VVQDASSLLN
EFFESEEVKA ALVEDAVVGT MASPSTPGTA YVLAHHVLGE VNGVKGAWGY VKGGMGGVTQ
ALRRSAEHLG VEIFTGAEVD SILAKGGKVE GIKLANGKIV HSRIVVSNAD PKTTFLKLLR
DAELDEDFLR RVRSLKSRGV SFKIVGYTEE LPNFGNGTTL GPEHVASELI LPSVDYVERA
FIDAKSLGYS KEPWLSINIQ SSVDPTVAPP GKFSFSIFGQ YLPYSKNLDD MRELVYQITL
EKIREYAPNF KPVKYEVLTP LDIERRFGIT EGNIFHLDMT PDQLYVFRPL PGYHDYTTPV
QGLYLCGSGT HPGGGVTGAP GFNAAQRILS DLRSNH
|
|---|
| |