| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0623 |
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| Symbol | aksA |
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| ID | 5105595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 572096 |
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| End bp | 573229 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640506527 |
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| Product | trans-homoaconitate synthase |
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| Protein accession | YP_001190722 |
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| Protein GI | 146303406 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR02090] isopropylmalate/citramalate/homocitrate synthases |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTCTCCA CTAGAAGAGT TAGAATATTT GATACAACTT TGCGTGACGG AGAGCAAGCT
CCTGGGATAG ATCTTACCAT AGATCAGAAA GTGAGGATAG CAAGGCAGTT GCAAAGGCTA
GGAGTAGACA CGATAGAGGC AGGGTTTCCA GCATCTTCAG AGGGCGAGTT CATCGCAACC
AAGAAGATCA TAGAGGAAGT GGGAGACTCC GTTGAGGTCA CAGGTCTTGC TAGGGCAAAT
AAGAACGATA TTGACAAGGG TATAGAGGCA GGTCTTTCAA GCATCCATGT GTTCATTGCC
ACCTCGGACG TGCATCTTAA GTATAAGTTG AAAATGACGA GAGAACAGGT AATAGACAGG
ATCTATGAAT CCGTGAGGTA CGCAAAATCT CACGGCCTGA TAGTGGAGTA CAGCCCTGAG
GACGCTACGC GAACGGAGGA AGAGTTCCTA TTGCAGGCTG TTAAAACCGC AGTTGAGGCT
GGCGCTGATA GGATAAATAT ACCAGATACC GTTGGGGTAA TGCATCCCTT CAAGTTCCAG
GAAGTAATTA GGAAAGTAGT TTCTGTAGCT TCGGGGAGGA TCATAAGTGT TCATTGCCAC
AATGACTTTG GATTGGCTAC AGCGAACTCC ATAGCCGGTG TTGTGGGCGG AGCTAGACAG
GTACATGTTA CAGTTAATGG TATAGGGGAG AGGGCCGGGA ACGCATCCCT TGAGGAAGTG
GTGATGGCCC TGAAGAAGCT CCTAGATTAC GAGGTTGGAG TCAAGCCCTG GTTACTTTAT
GACACCAGTA AGCTTGTATC AGAGCTTACG GGTGTTCCAG TCCCGTTCTT CAAGGCGGTA
GTAGGGGACA ATGCTTTTGG ACATGAGGCC GGGATCCACG TTCATGGTGT TATAGAAAAT
CCGCTCACCT ACGAGCCCAT GTCACCTGAG GAAGTCGGCA ACTTCAGGAG ACTTGCCTTG
GGTAAACATA GCGGAATACA TGGGCTTAGA AAGATCCTTG AGGACCAGGG TATATACCTG
GATGACGAGA AGTTAAAGGT AGTGTTGAGC GAAGTTAAGA AGATGGCAGA TACTGGTCAT
AGGGTAAGTG CAGAGGACGC GAAGAGGATA GCATCTAGAT TTTTGAGCTC CTGA
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| Protein sequence | MFSTRRVRIF DTTLRDGEQA PGIDLTIDQK VRIARQLQRL GVDTIEAGFP ASSEGEFIAT
KKIIEEVGDS VEVTGLARAN KNDIDKGIEA GLSSIHVFIA TSDVHLKYKL KMTREQVIDR
IYESVRYAKS HGLIVEYSPE DATRTEEEFL LQAVKTAVEA GADRINIPDT VGVMHPFKFQ
EVIRKVVSVA SGRIISVHCH NDFGLATANS IAGVVGGARQ VHVTVNGIGE RAGNASLEEV
VMALKKLLDY EVGVKPWLLY DTSKLVSELT GVPVPFFKAV VGDNAFGHEA GIHVHGVIEN
PLTYEPMSPE EVGNFRRLAL GKHSGIHGLR KILEDQGIYL DDEKLKVVLS EVKKMADTGH
RVSAEDAKRI ASRFLSS
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