| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0546 |
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| Symbol | |
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| ID | 5103706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 500909 |
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| End bp | 503131 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640506450 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001190645 |
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| Protein GI | 146303329 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTTC TCGAGAGAAT CTCAGAATCT TTAAAGGTAT TTGGTGCTGA TATAGCTCAC
ATTTACACTG AGACGGCGCT CGATCCTGAG ATGGGGCCCG TAGTCGCGGA GAGCTCCCTT
GATTCAAGGA TTATAAATAG TTTGAGGGAG GCCGGCATTG AGAGGTTTTA CAAGTACCAA
TGGGAGTCCA TGGAGGCAAT ATTCAACCGC GAAAATCTTG CCATCATCTC AGGCACAGGG
ACAGGTAAGA CGGAGGCCTT CTTCGTTCCC CTACTACAAC TGGCGCTCAA GGGGGAGAGA
TCCGTCCTTG TGTACCCTAC TAAGGCCCTG GCAAGAGATC AACTGGTCAG AATGAGGTGG
CTAACCAAGG ATCTCCTAGA CGTTAGGATC GCGGTCCTAG ATGGGGATAC GCCCCAAAGG
GTGAGGGAGG AGATATATGA AAATCCGCCC GAGATCTTGA TCACAAACCC TGATATGATC
CATTTGGGGC TTTCGCTCTC CCCTAGATTT AGGTCACTCG TCAGGGGAGC GGACCATTAC
GTAGTGGATG AAATGCACGT GTATGACGGT GTTTTAGGCT CTCACCTACG TAGGATCTTA
GATAGGATAA GGGAACTTAA TCGAGAGATC CACGTTATTG GTGCCAGCGG AACTGTGGAA
GCTACACCCC TGCTCCTTAA CGAGCTATTT GGCGTTGAGG GGAAGGTGAT TAGAGGGGTT
CCGAGAAGGC GAGGGATGGC GATTCATGCC CTCGTGGCGT CCAACGGTGT AAGTAGATGG
ACCCTTTCGG CTTACCTAGC AGGCTTAATG GTGAAGGAGG GGTTGAAGAC CTTGATTTTC
GTGGACTCCC AGCAGATGGC AGAGAGACTG GCAAAGATGG CAGAGAGGTT TGGGGCCAAC
CTAGCGGTTC ATAGGGCTGG TATCTTGGCT AACGAGAGGG TTGAAGTTGA GGAGAAACTG
AGAAAGGGAG AACTTCAGGG AGTAGTAGCT ACCCCTACCC TGGAACTGGG GATTGATATA
GGTAGCCTGG ACGTTGTGAT AATGAGCGAG AATCCGCCCA GTTACCCCAA ATACTTGCAG
AGGGCAGGAA GAGCGGGAAG AAGGAACAAG CTAGGCCTAG TCTTCACAGT GATGGGGGAT
AATCCCATTG ATTCCTATTT CCTTAGGAGG CCTCATGAGT TCTTCAATAG GAAACTCACT
CCCATAACCT TCGATAACAC CAACCTCGAG GTCCTTAAGG TCCACGCTGC AGCTTACCTT
GTCGAGAAAT ACGCTGTGAA GAGAGATGAA CTTCCAGCCC TATGGGTGAA GGCCCTTGAC
GAACTGGCAA AGGAGAAGGT TATAACAGAG AGAAAGGGAA CTTATTACGC TACTCCAAGA
ACCACGTCCT TCGTCAGGTC GAGTTCCCTT AGAAGTGCGG GTCCTGTGGT GGACATCGTT
GAGAACAGGA AAATCGGCGA GAGGGAGCTC CCTGCAGCTC TATTTGACCT GTACCCTGGT
GCGACCTACC TGGTCTCTAA GAGAAGCTAT CAAGTGAAGA GTCTAGACTT GAAGAGTCTA
GAGGCAAAGG TAGAGAGGAC TAAGGATGAA CAGGACTACT ATACCAAGCC CCTCTACAAG
GTAGACATGA AGGAGTTCAG GGAAGTTGAG AGCAGAAAGG TACTTGGATT GCCGGTAAAA
TACGGGGAGA TTAAGGTCAC GGTTTCAGTG GTGGGCTACG TGATCTTTGA CTACTACTCA
AAGAGGGAGA AACCAAGGGC TGAGGTGGAG TACGATGACC CCATAGAGTT CACTTACGAT
ACTAAGGGCC TTGTGATAAA GCATCCTATC CTGGAGGATT GGGATCTCCT CTCATCAATG
GAGGCATATC ACGCGACTGA GCACGTTCTA ATAGCAGCCG GGAGGGTCGT GGCGGGTGGT
TCAATCACTG ACCTATCTGG GATAAGCTAT CCCTCAGGAC ATGTGGTGAT TTACGACTCA
ACCATAGGGG GTAATGGGGT CTCACGTCTC CTATATCAGC GCCTGGAGTC GGCCTACGAC
ATTGCCCTAG ATATAGTGAG AGGTTGTGAT TGCGAGGACG GATGCCCTAA GTGCATATTT
GACCCGTACT GTGGAAACAA CAACAAAGTT CTCTCCAAGA AGAAGTCCAT GAGATTGATT
CAAACAGTGA TGGAAGGTGA AGACACCGAG TACACCCCAC CAGATGGGGA GAGCGTGAGG
TAG
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| Protein sequence | MEFLERISES LKVFGADIAH IYTETALDPE MGPVVAESSL DSRIINSLRE AGIERFYKYQ
WESMEAIFNR ENLAIISGTG TGKTEAFFVP LLQLALKGER SVLVYPTKAL ARDQLVRMRW
LTKDLLDVRI AVLDGDTPQR VREEIYENPP EILITNPDMI HLGLSLSPRF RSLVRGADHY
VVDEMHVYDG VLGSHLRRIL DRIRELNREI HVIGASGTVE ATPLLLNELF GVEGKVIRGV
PRRRGMAIHA LVASNGVSRW TLSAYLAGLM VKEGLKTLIF VDSQQMAERL AKMAERFGAN
LAVHRAGILA NERVEVEEKL RKGELQGVVA TPTLELGIDI GSLDVVIMSE NPPSYPKYLQ
RAGRAGRRNK LGLVFTVMGD NPIDSYFLRR PHEFFNRKLT PITFDNTNLE VLKVHAAAYL
VEKYAVKRDE LPALWVKALD ELAKEKVITE RKGTYYATPR TTSFVRSSSL RSAGPVVDIV
ENRKIGEREL PAALFDLYPG ATYLVSKRSY QVKSLDLKSL EAKVERTKDE QDYYTKPLYK
VDMKEFREVE SRKVLGLPVK YGEIKVTVSV VGYVIFDYYS KREKPRAEVE YDDPIEFTYD
TKGLVIKHPI LEDWDLLSSM EAYHATEHVL IAAGRVVAGG SITDLSGISY PSGHVVIYDS
TIGGNGVSRL LYQRLESAYD IALDIVRGCD CEDGCPKCIF DPYCGNNNKV LSKKKSMRLI
QTVMEGEDTE YTPPDGESVR
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