Gene Msed_0518 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0518 
Symbol 
ID5103678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp474513 
End bp475520 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content49% 
IMG OID640506422 
Producthypothetical protein 
Protein accessionYP_001190617 
Protein GI146303301 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00400384 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0131254 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCCTAG ATTTTAACAG GGAGCCTGAA TTTCCTCCCT ACAACGTTTA CCCTCCACGG 
TGGAGTTTCG ATAACGAGAA GGCCTGGCAA CTTTACAGAA GGGCCAAGAG GGAACAATGG
GATGAACAAG ACATAAACTG GGAAAAAGTA AAGGAGATTG CCTCAGGACT GGACAGAAAG
CAGAGATTGG CCATAGCCTA CTGGTGGTCC CTACTCTCCA CCTTTGATAA TGCCACTCCG
GTCTTCGCAT ATGCACTGGT AAAATCACAC GAGCTTCACC TGGACACCGC GGTCAAGGGA
GTCATAACAA CCATCACCTA CGATGAGAAT AGGCACAACG TGATGTGTGG GCTAGCCATA
AATAGTGTAT TACCTGGTTA TCCCTTCGAT TTCAAACCCC AGGATGACCT GGAAAGGAAG
GTAAAACTTA ACACGTTATG GGCGTGGTAT AATGGTTCCA GGTACTGGAA AGCTTACCTA
GAGGCTTACA GCAAGTATAC GATGGACGTT CTCTTTACCT CTTTCATGAT GGGAGAGGCT
GCGGCGACAA CAGTGTTCTC CACCATGTCC AAGGGGTCAA AGATCGAGGA ATTTGGAAAG
GCTTTCAAGA ACACGGCCGT GGATGAGACC AGACATTACG CCTTTACTCA CCTCATTATG
ACCAGCAACG CCGCCAGCAT GAATGATGAA AGGAAGAAAC TGGTGTCCAA GCAGGTTAGA
GCGGGATTCG TTTTCCTTTC CCTGATAACT TACAGGCCTC CAAAGGACTT CTGGAGACTC
CCTCCGTGGT ACCTTGAGGT CACGGAGAAG ATGGAGGATC TCGCAAGAAG CGCAGGATTC
TACATTCCGG AAATGAAGGA GAAGGAGGAG GCGTGGAGAA CTGCCATAAT GAGGGTGGGA
GCCACACTGG GTAGGTACGG AGTTCCAATG CCTGCTATCC CTGAGCTTGG AATAACAGGT
GAAGAGATAA AGGATCTTAA GGAAGACGAT TTCGTCCCAG TCTTCTAG
 
Protein sequence
MSLDFNREPE FPPYNVYPPR WSFDNEKAWQ LYRRAKREQW DEQDINWEKV KEIASGLDRK 
QRLAIAYWWS LLSTFDNATP VFAYALVKSH ELHLDTAVKG VITTITYDEN RHNVMCGLAI
NSVLPGYPFD FKPQDDLERK VKLNTLWAWY NGSRYWKAYL EAYSKYTMDV LFTSFMMGEA
AATTVFSTMS KGSKIEEFGK AFKNTAVDET RHYAFTHLIM TSNAASMNDE RKKLVSKQVR
AGFVFLSLIT YRPPKDFWRL PPWYLEVTEK MEDLARSAGF YIPEMKEKEE AWRTAIMRVG
ATLGRYGVPM PAIPELGITG EEIKDLKEDD FVPVF