| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0401 |
|---|
| Symbol | |
|---|
| ID | 5105518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 351598 |
|---|
| End bp | 353205 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640506307 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001190502 |
|---|
| Protein GI | 146303186 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATATT ATAACTACAA TTTAACGGTG GATAAGCTCC TCGACTACGG GTCCACCGTG
TACTCAAGCA AGGAGATCGT GTATAGGGAT AGGAGGCGTT ACACATTTTC CAAGTTTAGG
GAGAGAGTAG AAGCCTTCGC TCAATCGCTT CTTAAGATTG GCGTGAAGCC AGGTGACAAG
GTGGCTGTAG TTGACTGGGA CACAGACGTT TACATGACAG CATATTACGC CGTGCCCATG
ATAGGGGCTG TCCTGCACAC AGTTAACGTT AGATATCCCC CTGAGGTCAT GCTTAAGACG
GTGCTTCACG CTGAGGATAA ATGGGCCATT GTCAGGGATG AGTTTACCCC GCTCCTCGAG
AAGGGAAAGG CCTTTCTTGG CGGGCTGAAG GGAGTGATCA CATATTCAGA TGAGAGAGAG
AAGGTTAAGA CTAGTTTCCC TACCCACGAT TTCTGGGAGC TCCAGGAGAG CGGTGAAAGG
TTGCCTCCCC AGGAGATCAA GGAGGACATG CAGGCGACCG TTTTCTATAC CTCTGGTACC
ACAGGTGAGC CGAAGGGTAT ATGGTTCACG CACAGGGACC TGGTTCTTCA TTCCATGAGC
GTGGCGCTCA CCACATCTAA GCCTCCACTT AGGTCGTCAC AGGACGACAA CTTCATGATT
CTCGTTCCCA TGTTCCACGT TCACCAGTGG GGGTTCCCCT ACGTCACGAT GCTCGTGGGG
GCAAATTATG TTCTGCCTGG TAGGTATGAC CCAGCGATGG AGATAGAACT CATGAGAAAG
GAACACGTTA CATTCTCCGC CATGGTTCCC ACAATCCTTT ACATGATTCT ATCTCACCCC
AACGCGTCCA AATATCCAGA GGTGTTTAAG GGTTGGAAGG TTATGATAGG TGGGTCGGCT
TTGCCCACTG AACTGGCATA TGCAGCTAGG AAGATGGGGA TAAACATTGC CGTAGGATAT
GGGATGTCCG AGACAGCACC TGTGCTAACT GTGGCCTACT ACACACCCGA GGTGGAGAAG
TTGCCAGAGG AGGATAGGTT CCTCCAACAG ATAAAGACAG GAGTACCCAT ACCCCTGTCT
CAGGTAAGGG TAGTTGATGA GAAGGGAAAC GACGTTCCTA GGGACGAGAA GACTGTGGGC
GAGATAGTTG CCAGGGCGCC TTGGCTAACG AGGTCGTATT ATAAGGATCC CGAGAGGACC
GAAAAGCTCT GGAAGGACTC ATGGCTTCAT ACTGGAGACC TGGCGGTTGT GGACAAGTAT
GGATACATCA GGATCGTGGA CAGGGATAAG GACGCCATAA AGAGCGGAGG CGAGTTCATC
CCCTCGCTTA TACTTGAGGA CATCATCTCC ACCCATCCTA AGGTAGGAGA GGTAGCCATT
GTGGGGATGA AGGACGAGAA GTGGGGAGAG AGACCTGTGG CATTCATTGT TCCCAAGGGA
GATCTAAAGG AAGAGGAGAT AAGACAGTTC CTATTGACTA AGGTCGAGGA AGGGAAGTTG
CAGAAGTGGT GGATTCCAGA CAGGTTCGTC TTCGTAAAGG AATTCCCGAA GACTTCCACT
AATAAGATAG ATAAAAAGGC TCTACGTAAT CAACTAAGCT CTGGTTAA
|
|---|
| Protein sequence | MGYYNYNLTV DKLLDYGSTV YSSKEIVYRD RRRYTFSKFR ERVEAFAQSL LKIGVKPGDK
VAVVDWDTDV YMTAYYAVPM IGAVLHTVNV RYPPEVMLKT VLHAEDKWAI VRDEFTPLLE
KGKAFLGGLK GVITYSDERE KVKTSFPTHD FWELQESGER LPPQEIKEDM QATVFYTSGT
TGEPKGIWFT HRDLVLHSMS VALTTSKPPL RSSQDDNFMI LVPMFHVHQW GFPYVTMLVG
ANYVLPGRYD PAMEIELMRK EHVTFSAMVP TILYMILSHP NASKYPEVFK GWKVMIGGSA
LPTELAYAAR KMGINIAVGY GMSETAPVLT VAYYTPEVEK LPEEDRFLQQ IKTGVPIPLS
QVRVVDEKGN DVPRDEKTVG EIVARAPWLT RSYYKDPERT EKLWKDSWLH TGDLAVVDKY
GYIRIVDRDK DAIKSGGEFI PSLILEDIIS THPKVGEVAI VGMKDEKWGE RPVAFIVPKG
DLKEEEIRQF LLTKVEEGKL QKWWIPDRFV FVKEFPKTST NKIDKKALRN QLSSG
|
|---|
| |