Gene Msed_0387 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0387 
Symbol 
ID5103630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp335222 
End bp335611 
Gene Length390 bp 
Protein Length129 aa 
Translation table11 
GC content49% 
IMG OID640506293 
Producthypothetical protein 
Protein accessionYP_001190488 
Protein GI146303172 
COG category[R] General function prediction only 
COG ID[COG1545] Predicted nucleic-acid-binding protein containing a Zn-ribbon 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.448785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGGAA TTCCATTACA GTTGAGGTAT ACGGTCCCTG AGAAGGGATA TGAGAAGTTC 
TGGGAGGGGC TGAGGAAAAA CGAGATCTGG GCCACGAAGT GTAGAAAGTG TGGGACACTG
TATTACCCCC CGCAAAGGGA TTGTACCTCG TGCTACACCT CCGAACTTGA GTGGGTGAAA
CTATCCAACA GGGGAAAGCT CATGACCTAT ACCGTGGTGA AGGCGAAACC GCAAGGGTAC
GAGAGTGAAG AGGATTACGT CATTGGAATA GTTAGAACTG ACGACGGAGT TGACCTGATG
TGTTGGATCA AGGGAACCCC AAGGGTTAAC TCCCACGTGA ATCTAGTGAC TGATGGAAAG
AGGGTTGTGG GTGAGATCCT TGATGTATGA
 
Protein sequence
MEGIPLQLRY TVPEKGYEKF WEGLRKNEIW ATKCRKCGTL YYPPQRDCTS CYTSELEWVK 
LSNRGKLMTY TVVKAKPQGY ESEEDYVIGI VRTDDGVDLM CWIKGTPRVN SHVNLVTDGK
RVVGEILDV