Gene Msed_0281 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0281 
Symbol 
ID5104917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp240332 
End bp241468 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content48% 
IMG OID640506187 
Productcitrate synthase 
Protein accessionYP_001190382 
Protein GI146303066 
COG category[C] Energy production and conversion 
COG ID[COG0372] Citrate synthase 
TIGRFAM ID[TIGR01800] 2-methylcitrate synthase/citrate synthase II 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.160338 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.143922 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGA TAAGTAGAGG ATTGGAAAAC GTATTCATTA AGACAACCTC CTTAACCTAC 
ATAGATGGAG AGAACGGGAT ACTGAGGTAC GGAGGATATG ATATAGAGGA TCTAGTTGAA
CACACCAGTT TTGAGGAAGT AGTACATCTT ATGCTATATG GGGACCTGCC CACTAAACTT
CAACTCCAGA GATTGAAGAG TGCATTAGAC GAGGCATATG AAGTACCGCA GCAGGTCATT
GACATGATAT ATTCTCTGCC AAGGGATTCG GATGCTGTGG GTATGATGGA AACAGCCTTT
TCAGCCCTTT CCTCCATCTA CGGAATGCCA TGGAACAAGG CCACAAATAG GGATAACGCG
GTTAAGCTGG TGGCAAGGGC CTCCACCGTG GTCGCAAACG TGTTAAGGGC AAAGGAGGGA
AAGAAACCTG CCATACCTGA GCCCTCTGAG AGCTTCGCTA AGAGCTTTCT AAAGGCCTCA
TTCTCCAGAA CGCCCACAGA GGAAGAGGTT AAGGCAATGG ATGCTGCATT AATACTCTAC
GCAGACCATG AAGTTCCGGC ATCCACAACG GCAGCCCTAG TCACCTCGTC AACTCTCTCT
GACATTTACT CCTGTGTAGT AGCAGCCCTT GCAGCACTGA AGGGACCCCT ACATGGTGGT
GCCGCAGAGG AGGCGTTCAA GCAGTTTGTG GAGATTGGAG AGCCTGACAT GACTGAGTCA
TGGTTTAAGA GAAAGATAAT CGAGGGCAAG TCCAGGCTAA TGGGGTTCGG ACACAGGGTA
TACAAGACCT ACGATCCTAG GGCAAAGATA TTCAAGAAGT ACGCTAAAGT TATCTCGGAG
AGGAACAGTG ACGCCAGAAA ATATTTCGAA ATAGCCCAGA AGTTAGAGGA GTTAGGAGTG
GAAACCTTCG GTGCCAAGCA CATCTACCCG AACACAGATT TCTACTCGGG TGTAGTGTTC
TACGCTTTAG GATTCCCAGT CTATATGTTC ACTTCCCTGT TCGCCCTTTC CAGGACTCTG
GGATGGACAG CTCATGTCAT AGAATACGTG GAAGATCAGC ATAGACTCAT AAGACCTAGG
GCCTTGTACG TTGGTCCTCT GAAGAGGGAT GTCGTGCCTA TAGAATTGAG AGGATAA
 
Protein sequence
MSQISRGLEN VFIKTTSLTY IDGENGILRY GGYDIEDLVE HTSFEEVVHL MLYGDLPTKL 
QLQRLKSALD EAYEVPQQVI DMIYSLPRDS DAVGMMETAF SALSSIYGMP WNKATNRDNA
VKLVARASTV VANVLRAKEG KKPAIPEPSE SFAKSFLKAS FSRTPTEEEV KAMDAALILY
ADHEVPASTT AALVTSSTLS DIYSCVVAAL AALKGPLHGG AAEEAFKQFV EIGEPDMTES
WFKRKIIEGK SRLMGFGHRV YKTYDPRAKI FKKYAKVISE RNSDARKYFE IAQKLEELGV
ETFGAKHIYP NTDFYSGVVF YALGFPVYMF TSLFALSRTL GWTAHVIEYV EDQHRLIRPR
ALYVGPLKRD VVPIELRG