Gene Msed_0230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0230 
Symbol 
ID5104096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp190549 
End bp190812 
Gene Length264 bp 
Protein Length87 aa 
Translation table11 
GC content42% 
IMG OID640506135 
Productlike-Sm ribonucleoprotein, core 
Protein accessionYP_001190331 
Protein GI146303015 
COG category[K] Transcription 
COG ID[COG1958] Small nuclear ribonucleoprotein (snRNP) homolog 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00778138 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
TTGCAGGCAA AGGTAGAGAA TCCTTTGAAA AGCCTAAGGA TGGCTACAAA CAAGATTGTC 
CTTGTTAAGC TGAAGGACGG TTCTGAGTAT ATAGGTAAAA TGGAACAATC AGATGGGACT
ATGAACCTGG TTCTAAGGGA CTGCACAGAA ATGAGGGAAG GTACTGCGGA CCCCATAGCG
AAGTATGGCA GAGTCTTAAT ACGTGGTAGT AATATTCTAT TTATCAGTGT GGATTACGAG
AACATCATTA ACACGGGCAA GTAA
 
Protein sequence
MQAKVENPLK SLRMATNKIV LVKLKDGSEY IGKMEQSDGT MNLVLRDCTE MREGTADPIA 
KYGRVLIRGS NILFISVDYE NIINTGK