Gene Msed_0218 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0218 
Symbol 
ID5104084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand+ 
Start bp179798 
End bp180472 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content44% 
IMG OID640506123 
Producturoporphyrinogen III synthase HEM4 
Protein accessionYP_001190319 
Protein GI146303003 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1587] Uroporphyrinogen-III synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0000000144428 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones7 
Fosmid unclonability p-value0.0267075 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGGTCT TATACCTTAG ACCTGAGGGG AGTTCGTTAC CAGAGCTTCC AGGGTTTAGT 
ATCCTCAACG TCTCTATTTT CTCCGTAAAG TGCCTCGAGT ATGACAACTC GTATCTGAAG 
AGTGACGGAG TTGCGTTTAC TAGCGTAAAC GCGGTAAGAT GCTTCAAGGA CTTTGATAGT 
ATACGGGGAA AAAGTATATT TTCCATAGGT CCGGGGACGG CTGAGGAGTT AAGGAAGCAT 
GGGTTCGAAT CGATCTATCC AGAAAGGTAT ACTAGCAAGG ATCTAGCTCT CCTGATCCTC 
AGGAGTGGCG TTCGCGAGGT TTCTGCCTTC AGGAGCCTCA AGGCATCAGA TGATATGAGG 
AGGATACTAG TCTCTATCCT ATATCATGAA GTATACGACT ACGATCTAAT CTTAGATGAA 
GAGAAGCTAA ACCAAGTTAA GGAACTTCTC GCTACGTGTT CCGTGGATGT TGTGGTGCTG 
ACGAGTTCAT TAATAGCTAA AAGTGTAGCT AATTTCATAA GGGATTGTCA TAAAGTAGTT 
ACCATAGGAC CAATGACATC TGCTTCACTG AAAACACTTA GACCGGACTT GAGTTTCACT 
GAAAGCGACG AGTCCACAAT AGATGGGACC GTTAAGGTTT TGAAGAGTTT GAAAGGAGGT 
GAAAGAGATG GATGA
 
Protein sequence
MRVLYLRPEG SSLPELPGFS ILNVSIFSVK CLEYDNSYLK SDGVAFTSVN AVRCFKDFDS 
IRGKSIFSIG PGTAEELRKH GFESIYPERY TSKDLALLIL RSGVREVSAF RSLKASDDMR 
RILVSILYHE VYDYDLILDE EKLNQVKELL ATCSVDVVVL TSSLIAKSVA NFIRDCHKVV 
TIGPMTSASL KTLRPDLSFT ESDESTIDGT VKVLKSLKGG ERDG