| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0210 |
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| Symbol | |
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| ID | 5104076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 171221 |
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| End bp | 173527 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640506115 |
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| Product | AAA family ATPase, CDC48 subfamily protein |
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| Protein accession | YP_001190311 |
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| Protein GI | 146302995 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family
[TIGR01243] AAA family ATPase, CDC48 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.798334 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0460927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTGCTG GTTCTAGCCC AGAGCAAAGG TCGCCAAGAC GAGAGTTGTC TCTGAAGGTG
ATGGAAGCAA GGCAAAAGGA TGTTGGTAGA GGAAAGGTAA GAATAGACGT TGAGATGCTT
GCACAAATCG ATGTTAGTCC AGGTGATGTA GTGGAGATTG AGGGTACTAG AAAGACGGCA
GCAATAGCGT GGCCACTGTC CCCAGATGAC GCCACTAGCG AGAGAGATAT AATCAGAATG
GATGGCATAA CTAGGAAGAA CGCAGGTGTC TCCATTGGAG ACAAGGTGAT AGTAAGGAAG
GCCTCTGTGA AGCAAGCTGC ATCCATCAAA CTTGCCCCTT CCAACTTTTC GATTACCGTA
GATCCAGGTT TCGTGGCATA CGTCAAGAAG AAGCTTAAGG AGTTCCCACT GGTTGAAGGT
GACACTGTTC TTATCCCAGT GCTGGGTCAG GCTATTCCCT TCACGGTAAT ACAGGTCAGA
CCGGCGTCGA TTGTGATGGT TGTCGACGAG ACCAGTATTT CCATCTCTGA CAAGCCCATA
GAGCAGACCA GGTATCCCAG GGTCACGTAC GAGGATATAG GAGGAATGAA AAACGTTATA
CAGAAGATCA GAGAACTTGT GGAGTTACCG TTGAGACATC CAGAACTCTT CAAGAGGTTG
GGAATCGAGC CACCAAAGGG GATCATGTTA TACGGTCCTC CAGGTGTGGG TAAGACCCTG
CTGGCCAAGG CTGTTGCCAA TGAAACTGAA TCCTATTTCA CCTCAATAAA CGGGCCAGAG
ATAATGAGCA AGTTCTACGG CGAGAGCGAG CAGAGGCTCA GGGAGATCTT CGAAGATGCT
AAGAAACATG CCCCAGCCAT AATATTCATT GATGAAGTAG ACGCCATAGC TCCCAAGAGG
GATGAGGTTA TAGGAGAGGT AGAGAGACGT GTTGTCGCGC AGTTGCTGAC ACTCATGGAT
GGTCTAGAGA GTAGGGGAAA TGTAATAGTC ATTGCAGCTA CCAACAGGCC AAATGCAGTA
GATCCTGCAC TGAGAAGGCC TGGGAGATTT GACCGTGAAA TAGAGATACC CCTACCAGAT
AAGCAGGGCA GACTGGAAAT ACTTCAGATC CACACTAGGA ACATGCCACT TTCAAAGGAC
GTGGAACTGG AGAAATTGGC TGATATAAGT CATGGCTATA CTGGGGCCGA CCTTTCTGCC
CTAGTCAGGG AGGCTGCAAT GAACGCCCTG AGAAGATATT TGCCCATGAT AGATATCAGT
CAGGACAAGA TCCCGCCAGA GATCCTAGAG AGAATGGAAG TCAAGATGGA GGACTTCATG
AATGCATTCA AGGAAATTGT GCCCAGCGGC ATGAGAGAGA TCTACATTGA GGTTCCAGAG
GTAAAGTGGG ATGACATAGG CGGTCTCAAC GAGATTAAGG AAGAGCTTAG AGAGGTAGCA
GAGTATCCGC TGAAGTTCCC AGACTACTAT GAAACCGCAG GAGTGGAACC ACCAAAGGGA
ATACTCCTGT TTGGACCTCC AGGCACAGGT AAGACCATGC TGGCAAAGGC TGTAGCAACC
GAGAGCGGAG CGAACTTTAT TGCTGTGAGA GGTCCTGAAG TTCTCTCTAA GTGGGTAGGG
GAGAGTGAGA GGGCAATCAG GGAGATATTT AGAAAGGCGA GAATGTATGC ACCATCGGTG
ATATTCTTCG ACGAAATAGA TGCCATAGCT CCCATGAGGG GAATCTCCTC TGACTCTGGT
GTAACTGAGA GACTAGTTAA CCAACTTCTA GCTGAGATGG ATGGCATAGA GAACCTAGAC
AACGTTGTTA TTGTGGCAGC TACCAATAGG CCAGATATAC TAGATCCAGC CCTACTGAGG
CCTGGAAGGT TCGAGAAACT TATGTACGTA CCCCCACCTG ACAAGAACGC TAGATATGAC
ATACTAAAGG TTCACACCAA GAAGGTTGCT CTCTCGGACG AAGTTAACCT AGAGGAACTA
GCTGAGAGGA CAGAGGGATA TACAGGCGCC GATCTGGCAG CCTTGGTTAG GGAGGCTGCA
ATGAGGGCCA TCAGAGAAGG GATGAGGGAA TGCGTAAATA GGGTCAGTGC AGCTTGTCCA
CCTAATGATA AGGATTGTCG CGACGCGAAA ATGAGAGATT GCATGAAGGG CGCAACAATT
AAGGTGGAGA ACAGGCATTT CAACGAAGCC TTAACTAAGG TTAAGCCATC GCTCAGCCAG
GAGATGATAC AATTCTATCA GACATGGATT GATAAGGCAA GACAGCAACT ACCAAGACAG
ACTGTGAAGC CCAGTACGTT TACGTGA
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| Protein sequence | MSAGSSPEQR SPRRELSLKV MEARQKDVGR GKVRIDVEML AQIDVSPGDV VEIEGTRKTA
AIAWPLSPDD ATSERDIIRM DGITRKNAGV SIGDKVIVRK ASVKQAASIK LAPSNFSITV
DPGFVAYVKK KLKEFPLVEG DTVLIPVLGQ AIPFTVIQVR PASIVMVVDE TSISISDKPI
EQTRYPRVTY EDIGGMKNVI QKIRELVELP LRHPELFKRL GIEPPKGIML YGPPGVGKTL
LAKAVANETE SYFTSINGPE IMSKFYGESE QRLREIFEDA KKHAPAIIFI DEVDAIAPKR
DEVIGEVERR VVAQLLTLMD GLESRGNVIV IAATNRPNAV DPALRRPGRF DREIEIPLPD
KQGRLEILQI HTRNMPLSKD VELEKLADIS HGYTGADLSA LVREAAMNAL RRYLPMIDIS
QDKIPPEILE RMEVKMEDFM NAFKEIVPSG MREIYIEVPE VKWDDIGGLN EIKEELREVA
EYPLKFPDYY ETAGVEPPKG ILLFGPPGTG KTMLAKAVAT ESGANFIAVR GPEVLSKWVG
ESERAIREIF RKARMYAPSV IFFDEIDAIA PMRGISSDSG VTERLVNQLL AEMDGIENLD
NVVIVAATNR PDILDPALLR PGRFEKLMYV PPPDKNARYD ILKVHTKKVA LSDEVNLEEL
AERTEGYTGA DLAALVREAA MRAIREGMRE CVNRVSAACP PNDKDCRDAK MRDCMKGATI
KVENRHFNEA LTKVKPSLSQ EMIQFYQTWI DKARQQLPRQ TVKPSTFT
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